ENSG00000198162:+:1:117402185:117414831

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198162:+:1:117402185:117414831 ENSG00000198162 ENST00000356554 + 1 117402186 117414831 472 GGAAGAGGAAGAACGUCUGAGAAAUAAAAUUCGAGCUGAUCAUGAGAAGGCCUUGGAAGAAGCAAAAGAAAAAUUAAGAAAGUCAAGAGAGGAAAUUCGAGCAGAAAUUCAGACAGAGAAAAAUAAGGUAGUCCAAGAAAUGAAGAUAAAAGAGAACAAGCCACUGCCACCAGUCCCUAUUCCCAACCUUGUAGGAAUACGUGGUGGAGACCCAGAAGAUAAUGACAUAAGAGAGAAAAGGGAAAAAAUUAAAGAGAUGAUGAAACAUGCUUGGGAUAACUAUAGGACAUAUGGGUGGGGACAUAAUGAACUCAGACCUAUUGCAAGGAAAGGACACUCCCCUAACAUAUUUGGAAGUUCACAAAUGGGUGCUACCAUAGUAGAUGCUUUGGAUACCCUUUAUAUCAUGGGACUUCAUGAUGAAUUCCUAGAUGGGCAAAGAUGGAUUGAAGACAACCUUGAUUUCAGUGUGGGAAGAGGAAGAACGUCUGAGAAAUAAAAUUCGAGCUGAUCAUGAGAAGG circ
ENSG00000198162:+:1:117402185:117414831 ENSG00000198162 ENST00000356554 + 1 117402186 117414831 22 AUUUCAGUGUGGGAAGAGGAAG bsj
ENSG00000198162:+:1:117402185:117414831 ENSG00000198162 ENST00000356554 + 1 117401986 117402195 210 AGUUUGAUCUUAGGCAUCCAGGGUUCCUUUUCUUUCUCAUUCCAGAUCUGAAUGUGUCUCACUGAUAAUUCUUUCCUUUUAAUGGCAAAAGUAGAAAACAAGUUCCUGGGUUUAAUGGAGAAACCUUUAUGUUUUAUAUUUAAAGGUUGACAUUCUUAAGUAGGCUCACUGUUACGUUUUAUUUCCUUCUUUUCUCACAGGGAAGAGGAA ie_up
ENSG00000198162:+:1:117402185:117414831 ENSG00000198162 ENST00000356554 + 1 117414822 117415031 210 UUUCAGUGUGGUGAGUGUAUGAUUGAUAACUAAUCUCUUAGAUUAACCAUGAAAAGACACAAUGUCUAACUGCUAUGGUCUGAACAUUUGUGCCUUCCUAAAAUUCAUAUGUUGAAACCUAAUCACUAAUGUGACGGUACUAGAAGAUGGGGACUUUGGGAGGUGAUUAGGUCAUGAGGGUUGACCUCUCAUGAAUGGAAAAAAUAUAUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
    • Please Click HERE to learn more details about the results from circRNAprofiler.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 76 0.004237288 0.0004138784 3.355863 GACAGA GACAGA
AGO1 2 134 0.006355932 0.0007256309 3.130796 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ERI1 2 148 0.006355932 0.0008008815 2.988443 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM28 2 157 0.006355932 0.0008492569 2.903831 AGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
FXR1 1 110 0.004237288 0.0005966298 2.828233 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PABPC5 10 643 0.023305085 0.0034615281 2.751164 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
EIF4B 3 299 0.008474576 0.0016125131 2.393830 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
NONO 5 467 0.012711864 0.0025155204 2.337247 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SNRPB2 2 233 0.006355932 0.0012577602 2.337247 AUUGCA,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS3 2 244 0.006355932 0.0013168857 2.270974 CUAUAG,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPN1 3 332 0.008474576 0.0017898895 2.243271 AAAAGA,AGAAGA AAAAGA,AGAAGA
SART3 7 673 0.016949153 0.0036227794 2.226044 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM46 13 1188 0.029661017 0.0063909269 2.214471 AAUGAA,AUCAUG,AUGAAA,AUGAAG,AUGAAU,AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 9 871 0.021186441 0.0046870381 2.176393 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUUAAA,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF4 10 1004 0.023305085 0.0054019189 2.109101 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SRSF11 1 185 0.004237288 0.0009997581 2.083490 AAGAAG AAGAAG
KHDRBS2 4 469 0.010593220 0.0025262705 2.068060 AAUAAA,AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
IGHMBP2 1 192 0.004237288 0.0010373834 2.030192 AAAAAA AAAAAA
SRSF10 38 3953 0.082627119 0.0212529227 1.958954 AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AGACAA,AGAGAA,AGAGAG,AGAGGA,CAAAGA,GAGAAA,GAGAAC,GAGAAG,GAGACC,GAGAGA,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
TRA2A 16 1860 0.036016949 0.0100029563 1.848250 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ESRP2 4 553 0.010593220 0.0029777742 1.830835 GGGAAA,GGGAAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC1 9 1124 0.021186441 0.0060469241 1.808868 AAAAAA,ACAAAU,AGAAAA,CUAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPAB 3 459 0.008474576 0.0024725201 1.777159 AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ZCRB1 2 358 0.006355932 0.0019296407 1.719772 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2B 14 1879 0.031779661 0.0101050821 1.653023 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPM 1 275 0.004237288 0.0014835121 1.514125 AAGGAA AAGGAA,GAAGGA,GGGGGG
MSI1 4 692 0.010593220 0.0037249053 1.507866 AGGAAG,AGGUAG,UAGGAA,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PUM1 8 1292 0.019067797 0.0069499315 1.456067 ACAUAA,AGAUAA,CCAGAA,CUUGUA,GUAGAU,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ENOX1 5 883 0.012711864 0.0047515386 1.419709 AAGACA,AGACAG,AGGACA,CAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF6 4 751 0.010593220 0.0040420328 1.389988 GUGGGG,GUGGUG,GUGUGG,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
G3BP2 2 470 0.006355932 0.0025316456 1.328028 GGAUAA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC4 1 322 0.004237288 0.0017361391 1.287259 AAAAAA AAAAAA,AAAAAG
SRSF7 24 4218 0.052966102 0.0226773093 1.223820 AAAGGA,AAGAAG,AAGGAC,AGAAGA,AGAGAA,AGAGAG,AGAGAU,AGAGGA,AGGAAG,AGGACA,CAGAGA,CUGAGA,GAAGAA,GAAGGC,GAGAGA,GAGGAA,GAUUGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
PPIE 22 4037 0.048728814 0.0217044263 1.166786 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUA,AAUAAA,AAUUAA,AUAAAA,AUAUUU,AUUAAA,UAAAAU,UUAUAU,UUUAUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ACO1 1 351 0.004237288 0.0018920154 1.163217 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
IGF2BP3 6 1252 0.014830508 0.0067349297 1.138833 AAAUUC,AACUCA,AAUUCA,ACACUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
CELF5 1 366 0.004237288 0.0019726410 1.103013 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM24 2 556 0.006355932 0.0029938993 1.086078 AGUGUG,GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZRANB2 4 937 0.010593220 0.0050417910 1.071133 AGGGAA,AGGUAG,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
FUS 4 961 0.010593220 0.0051707920 1.034684 AAAAAA,GGGUGC,GGGUGG,UGGUGG AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU

RBP on BSJ (Exon Only)

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Spreadsheet

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RBP on BSJ (Exon and Intron)

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Spreadsheet

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Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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