ENSG00000198176:+:13:113585773:113585849
1. Sequences
| id |
gene |
transcript |
strand |
chrom |
startGR |
endGR |
length |
seq |
type |
| ENSG00000198176:+:13:113585773:113585849 |
ENSG00000198176 |
MSTRG.8096.4 |
+ |
13 |
113585774 |
113585849 |
76 |
AAAAAUCAUUUUUCUUCUCUGGGAAGGUGAACAUUUGUAGCAUUGAUUUCCCGGAUCUGGUAACAUGGCAAAAGAUAAAAAUCAUUUUUCUUCUCUGGGAAGGUGAACAUUUGUAGCAUUGAUUUC |
circ |
| ENSG00000198176:+:13:113585773:113585849 |
ENSG00000198176 |
MSTRG.8096.4 |
+ |
13 |
113585774 |
113585849 |
22 |
UGGCAAAAGAUAAAAAUCAUUU |
bsj |
| ENSG00000198176:+:13:113585773:113585849 |
ENSG00000198176 |
MSTRG.8096.4 |
+ |
13 |
113585574 |
113585783 |
210 |
CCGCAGGGGGCAUUUCCGUCUGGCGAGGCGACUGAAAAUCCUGAGUGUGGGAGUCGGUUUGGCCAGCUCCGCUCUCAGGAUGGAGGGUGCCUUUGGGAAGGAAGGUCCGCGUUUCCUUUGAGAUGUGUUAUUUUUUAAACUUCGUUUUUCAUUCUUACUUAUUUCUUGUUUUUCCUUACUUUUUUUUUUUUUUUUACCAGAAAAAUCAUU |
ie_up |
| ENSG00000198176:+:13:113585773:113585849 |
ENSG00000198176 |
MSTRG.8096.4 |
+ |
13 |
113585840 |
113586049 |
210 |
GGCAAAAGAUGUAAGUAUGUUUGCUUCAUGCUGCACACGAAUGUUUGCCUCGCACUAAAUUCUUUGUAGUUCUCUGCCUUUAUUUCAGAAUGACAACACAUAAGCUACAGUAGUGUUUAUUUUCAGACUUUUAAAGCGUCUGAAGCGGGAUGAAGGUGAAAGAUGGAAGGAUCUGAUCUCUGAAGCUGCGGUCACCACCCACAAGUUGUG |
ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
- Please Click HERE to learn more details about the results from circRNAprofiler.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
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Spreadsheet
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RBP on BSJ (Exon Only)
Plot
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Spreadsheet
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RBP on BSJ (Exon and Intron)
Plot
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Spreadsheet
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Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.