ENSG00000152404:-:11:107348936:107353736

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000152404:-:11:107348936:107353736 ENSG00000152404 ENST00000282251 - 11 107348937 107353736 330 UUUAUGGGAAAAACAGAUGGAGACUAUUACACCCUGGAUGACAUGUUUGUCUCCAAAGCAGCUGAGAGAGAACGUCUUGGUGAAGAGGAAGAGAACCAAAGGAAAAAAGCUAUUGCUGAGCAUCGGAGUCUUGCUGCACAAAUGGAAAAAUGUCUGUAUUGUUUUGACAGCUCUCAAUUUCCCAAGCAUCUUAUUGUUGCAAUAGGUGUUAAGGUUUAUUUAUGUUUACCCAACGUACGGUCUCUUACUGAGGGGCACUGCCUGAUAGUCCCUUUGCAGCACCAUAGAGCAGCUACUUUGUUGGAUGAAGACAUCUGGGAGGAGAUCCAGUUUAUGGGAAAAACAGAUGGAGACUAUUACACCCUGGAUGACAUGUUUGU circ
ENSG00000152404:-:11:107348936:107353736 ENSG00000152404 ENST00000282251 - 11 107348937 107353736 22 AGGAGAUCCAGUUUAUGGGAAA bsj
ENSG00000152404:-:11:107348936:107353736 ENSG00000152404 ENST00000282251 - 11 107353727 107353936 210 AUUCAGUAAACUUUAGCUGUGGUGAUGAUGAUGAUAGAUUGACUCUAGAAGAUCAAACAAAUAUUAAUCAUGUUUUUUCUUUUCUUUUAAAUGUAUUAGUUUUAUCAUAGAACUUACAGAUACAGAUUUAGGAUACCACAGUGCAGUAAAAUCUUAAUCACUACCUUCUACUCUCUAUUACUGUUAUUUUGGUUUUUCAGUUUAUGGGAA ie_up
ENSG00000152404:-:11:107348936:107353736 ENSG00000152404 ENST00000282251 - 11 107348737 107348946 210 GGAGAUCCAGGUCAGCAUAAUAAAUGUUCAUUAUCAUUUUAAAACUCAUGAGCAAUUUUUGUAAAUUAUUGUGAUAAAUUCCAAUAGGUAUAACUUCAUUUAAUGAUUUUAGUUUCUAAACUUAAACACGUGUGUUUUCAUAGUUGUAUAUAUCUGUGGAUCAUGAUGUUUCCAUCAUUUUAUUUCCCUUGUGUACUCCAGAUUUUGAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
    • Please Click HERE to learn more details about the results from circRNAprofiler.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 110 0.006060606 0.0005966298 3.344554 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SNRPB2 3 233 0.012121212 0.0012577602 3.268605 GUAUUG,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZFP36L2 4 295 0.015151515 0.0015910129 3.251445 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
MATR3 2 183 0.009090909 0.0009890080 3.200370 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGHMBP2 1 192 0.006060606 0.0010373834 2.546513 AAAAAA AAAAAA
PABPC4 2 322 0.009090909 0.0017361391 2.388542 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPD 5 657 0.018181818 0.0035367787 2.361989 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC3 2 336 0.009090909 0.0018113897 2.327328 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 5 673 0.018181818 0.0036227794 2.327328 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IGF2BP1 1 236 0.006060606 0.0012738854 2.250227 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
CSTF2 3 503 0.012121212 0.0027090220 2.161690 GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPM 1 275 0.006060606 0.0014835121 2.030445 AAGGAA AAGGAA,GAAGGA,GGGGGG
ELAVL3 4 706 0.015151515 0.0038001559 1.995332 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF1 3 584 0.012121212 0.0031444005 1.946677 GUUUGU,UGUCUG,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SSB 1 298 0.006060606 0.0016071381 1.914968 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
EIF4B 1 299 0.006060606 0.0016125131 1.910151 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF2 2 456 0.009090909 0.0024563950 1.887882 GUCUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM41 1 304 0.006060606 0.0016393883 1.886304 UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL1 7 1231 0.024242424 0.0066220538 1.872183 AUUUAU,UAUUUA,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
NONO 2 467 0.009090909 0.0025155204 1.853568 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
G3BP2 2 470 0.009090909 0.0025316456 1.844349 GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC1 6 1124 0.021212121 0.0060469241 1.810616 AAAAAA,AAAAAC,ACAAAU,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM3 2 505 0.009090909 0.0027197721 1.740939 AGACUA,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ZCRB1 1 358 0.006060606 0.0019296407 1.651130 GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
LIN28A 5 1105 0.018181818 0.0059447983 1.612797 AGGAGA,CGGAGU,GGAGAU,GGAGGA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ESRP2 2 553 0.009090909 0.0029777742 1.610190 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SYNCRIP 1 402 0.006060606 0.0021661426 1.484334 AAAAAA AAAAAA,UUUUUU
ZNF638 1 405 0.006060606 0.0021822677 1.473634 UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ELAVL4 5 1218 0.018181818 0.0065521782 1.472450 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
AGO2 1 413 0.006060606 0.0022252681 1.445483 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CELF4 1 448 0.006060606 0.0024133946 1.328398 GGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 1 459 0.006060606 0.0024725201 1.293480 AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
YBX2 1 459 0.006060606 0.0024725201 1.293480 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
MSI1 2 692 0.009090909 0.0037249053 1.287221 AGGAAG,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF10 16 3953 0.051515152 0.0212529227 1.277336 AAAGGA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AGAGAA,AGAGAG,AGAGGA,GAGAAC,GAGAGA,GAGGAA,GAGGAG,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPU 1 471 0.006060606 0.0025370206 1.256327 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM6 1 484 0.006060606 0.0026068962 1.217129 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ELAVL2 15 3891 0.048484848 0.0209196700 1.212674 AUUUAU,GUAUUG,UACUUU,UAUGUU,UAUUGU,UAUUUA,UCUUAU,UGUAUU,UUAUGU,UUAUUG,UUAUUU,UUUAUG,UUUAUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 3 1004 0.012121212 0.0054019189 1.165990 AGGAAG,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 6 1860 0.021212121 0.0100029563 1.084462 AAGAGG,AGAGGA,AGGAAG,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RC3H1 1 531 0.006060606 0.0028595232 1.083687 UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SRSF7 14 4218 0.045454545 0.0226773093 1.003175 AAAGGA,AGACUA,AGAGAA,AGAGAG,AGAGGA,AGGAAG,CUGAGA,GAGACU,GAGAGA,GAGAUC,GAGGAA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA

RBP on BSJ (Exon Only)

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Spreadsheet

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RBP on BSJ (Exon and Intron)

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Spreadsheet

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Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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