ENSG00000038532

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261657 ENSG00000038532 No_inf pgwt_inf CLEC16A protein_coding protein_coding 11.44054 6.982337 18.52068 0.3198148 11.25263 1.406069 1.816729 3.101349 1.563415 0.3969330 0.4782533 -0.9836406 0.2433000 0.441425 0.16395 -0.277475 0.7305512703 0.0001576407 FALSE FALSE
ENST00000703130 ENSG00000038532 No_inf pgwt_inf CLEC16A protein_coding protein_coding 11.44054 6.982337 18.52068 0.3198148 11.25263 1.406069 2.751759 0.179916 4.861768 0.1799160 0.4850251 4.6810119 0.3057917 0.028175 0.53200 0.503825 0.2242437852 0.0001576407 FALSE TRUE
MSTRG.10620.18 ENSG00000038532 No_inf pgwt_inf CLEC16A protein_coding   11.44054 6.982337 18.52068 0.3198148 11.25263 1.406069 4.595598 0.000000 11.285436 0.0000000 11.2854364 10.1415243 0.1220583 0.000000 0.21590 0.215900 0.9928472467 0.0001576407   FALSE
MSTRG.10620.3 ENSG00000038532 No_inf pgwt_inf CLEC16A protein_coding   11.44054 6.982337 18.52068 0.3198148 11.25263 1.406069 1.546198 2.594219 0.000000 0.4287565 0.0000000 -8.0247068 0.2356417 0.378375 0.00000 -0.378375 0.0001576407 0.0001576407 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000038532 E001 0.0000000       16 10944539 10944563 25 +      
ENSG00000038532 E002 0.1315150 0.0123239745 4.439018e-01   16 10944564 10944580 17 + 0.000 0.103 10.303
ENSG00000038532 E003 2.0244222 0.0091736054 1.881817e-01 0.5025226082 16 10944581 10944797 217 + 0.565 0.370 -0.994
ENSG00000038532 E004 2.9222126 0.0065550906 2.153304e-03 0.0320916053 16 10957782 10957910 129 + 0.755 0.317 -2.123
ENSG00000038532 E005 4.2621383 0.0037709232 1.272547e-02 0.1085211516 16 10962455 10962588 134 + 0.846 0.534 -1.316
ENSG00000038532 E006 5.1962995 0.0029011883 4.524235e-01 0.7495584405 16 10969161 10969309 149 + 0.832 0.746 -0.344
ENSG00000038532 E007 3.6967028 0.0040362915 3.787977e-01 0.6958934221 16 10971125 10971230 106 + 0.615 0.724 0.462
ENSG00000038532 E008 0.2454652 0.0161078248 8.820475e-01   16 10972481 10972553 73 + 0.087 0.103 0.269
ENSG00000038532 E009 0.0000000       16 10972554 10972559 6 +      
ENSG00000038532 E010 2.7944075 0.0823032312 8.594736e-01 0.9547780875 16 10972938 10973017 80 + 0.591 0.567 -0.109
ENSG00000038532 E011 2.5511151 0.0058598418 8.285940e-01 0.9422331329 16 10973018 10973061 44 + 0.565 0.534 -0.146
ENSG00000038532 E012 4.5770635 0.0032191950 2.978081e-01 0.6255466085 16 10977225 10977399 175 + 0.803 0.678 -0.508
ENSG00000038532 E013 2.0425002 0.0428312333 4.577299e-01 0.7530363960 16 10979329 10979382 54 + 0.538 0.417 -0.605
ENSG00000038532 E014 4.4127079 0.0032329110 5.475213e-02 0.2615500994 16 10982878 10982991 114 + 0.832 0.597 -0.972
ENSG00000038532 E015 5.9369969 0.0084535127 5.460962e-01 0.8087841986 16 11003074 11003257 184 + 0.873 0.804 -0.267
ENSG00000038532 E016 1.5342874 0.0089812811 1.005122e-01 0.3653398861 16 11003258 11003305 48 + 0.509 0.257 -1.468
ENSG00000038532 E017 3.7145733 0.0038366227 2.130048e-01 0.5349732817 16 11020193 11020325 133 + 0.591 0.746 0.656
ENSG00000038532 E018 0.2279004 0.2591011999 3.737573e-01   16 11024153 11024261 109 + 0.160 0.000 -13.801
ENSG00000038532 E019 0.0000000       16 11024473 11024479 7 +      
ENSG00000038532 E020 0.0000000       16 11024480 11024507 28 +      
ENSG00000038532 E021 0.0000000       16 11024508 11024526 19 +      
ENSG00000038532 E022 0.0000000       16 11024527 11024571 45 +      
ENSG00000038532 E023 0.0000000       16 11024818 11024820 3 +      
ENSG00000038532 E024 1.7535291 0.0085616381 1.570456e-01 0.4590047335 16 11024821 11024866 46 + 0.325 0.534 1.117
ENSG00000038532 E025 2.9822824 0.0873938803 2.858236e-01 0.6134027446 16 11024867 11024921 55 + 0.509 0.678 0.754
ENSG00000038532 E026 0.0000000       16 11036047 11036092 46 +      
ENSG00000038532 E027 3.8775791 0.0041682316 6.008551e-01 0.8380492603 16 11039754 11039876 123 + 0.719 0.653 -0.278
ENSG00000038532 E028 0.2461098 0.0161447974 8.821547e-01   16 11039877 11042253 2377 + 0.087 0.103 0.269
ENSG00000038532 E029 3.6111373 0.0053184824 3.461732e-01 0.6672864720 16 11042254 11042363 110 + 0.719 0.597 -0.519
ENSG00000038532 E030 3.3328066 0.0048146147 7.307296e-02 0.3069434279 16 11044028 11044072 45 + 0.737 0.498 -1.053
ENSG00000038532 E031 0.1139502 0.0111865061 6.491905e-01   16 11044073 11044105 33 + 0.087 0.000 -13.224
ENSG00000038532 E032 0.1139502 0.0111865061 6.491905e-01   16 11044106 11044222 117 + 0.087 0.000 -13.224
ENSG00000038532 E033 3.7253988 0.0261729224 3.074187e-01 0.6338704966 16 11047292 11047342 51 + 0.737 0.597 -0.594
ENSG00000038532 E034 0.7530919 0.0142457810 2.955389e-01 0.6234995304 16 11047343 11048318 976 + 0.160 0.317 1.269
ENSG00000038532 E035 0.2620121 0.0161250863 1.837003e-01   16 11048319 11048518 200 + 0.000 0.187 13.559
ENSG00000038532 E036 4.3991336 0.0033582848 8.131455e-01 0.9364114693 16 11051513 11051641 129 + 0.719 0.746 0.109
ENSG00000038532 E037 4.3356526 0.0491156940 2.271837e-01 0.5519189621 16 11060902 11061022 121 + 0.638 0.804 0.684
ENSG00000038532 E038 6.9155133 0.0022988137 6.332201e-01 0.8537824873 16 11120615 11120766 152 + 0.922 0.872 -0.190
ENSG00000038532 E039 1.6674307 0.0082406907 2.049267e-01 0.5245645129 16 11123742 11123742 1 + 0.509 0.317 -1.053
ENSG00000038532 E040 6.2269358 0.0023915089 6.581561e-02 0.2900396223 16 11123743 11123894 152 + 0.945 0.746 -0.773
ENSG00000038532 E041 3.0263152 0.0051306844 6.012049e-01 0.8381871107 16 11123895 11123899 5 + 0.638 0.567 -0.316
ENSG00000038532 E042 3.7453761 0.0051468634 4.681678e-01 0.7597456565 16 11123900 11123946 47 + 0.719 0.626 -0.394
ENSG00000038532 E043 2.9289186 0.0056476691 9.531327e-01 0.9886067179 16 11125979 11126009 31 + 0.591 0.597 0.028
ENSG00000038532 E044 4.9004361 0.0237986369 1.054887e-01 0.3749313523 16 11126010 11126146 137 + 0.860 0.653 -0.838
ENSG00000038532 E045 1.1139407 0.0118423940 5.406307e-01 0.8053357486 16 11126147 11126787 641 + 0.277 0.370 0.591
ENSG00000038532 E046 0.3417064 0.0296182583 1.472419e-01   16 11136069 11136283 215 + 0.222 0.000 -14.586
ENSG00000038532 E047 0.4910700 0.0162806376 8.506268e-01   16 11149886 11150317 432 + 0.160 0.187 0.269
ENSG00000038532 E048 0.0000000       16 11156574 11156682 109 +      
ENSG00000038532 E049 0.0000000       16 11157077 11157233 157 +      
ENSG00000038532 E050 4.8601578 0.0062558649 7.316019e-01 0.9021979399 16 11166388 11166552 165 + 0.787 0.746 -0.167
ENSG00000038532 E051 1.1736205 0.0447233522 1.096171e-01 0.3823346660 16 11173766 11173891 126 + 0.445 0.187 -1.731
ENSG00000038532 E052 1.4893265 0.0094979080 3.688026e-01 0.6872308706 16 11174154 11174277 124 + 0.325 0.460 0.755
ENSG00000038532 E053 138.8803195 0.0001674592 5.426042e-06 0.0002483425 16 11178335 11182186 3852 + 2.106 2.183 0.259

Help

Please Click HERE to learn more details about the results from DEXseq.