ENSG00000064607

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000452918 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding protein_coding 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 17.857841 18.816883 18.988928 0.4897374 0.3898350 0.01312384 0.37840833 0.372650 0.382675 0.010025 1.0000000000 0.0001377959 FALSE  
ENST00000593795 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding nonsense_mediated_decay 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 7.746186 8.151472 8.001410 1.8944366 1.2056361 -0.02677327 0.16206667 0.157350 0.160250 0.002900 1.0000000000 0.0001377959    
ENST00000594773 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding nonsense_mediated_decay 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 12.149931 11.344083 13.818278 0.4217356 0.9717869 0.28441024 0.25851667 0.226825 0.276800 0.049975 0.9928472467 0.0001377959 TRUE  
ENST00000597095 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding protein_coding_CDS_not_defined 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 2.763436 5.586635 1.525580 2.2343736 0.6444579 -1.86577560 0.05623333 0.109100 0.030550 -0.078550 0.9928472467 0.0001377959    
ENST00000600377 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding protein_coding 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 1.683854 0.000000 3.652508 0.0000000 0.2158570 8.51668815 0.03535000 0.000000 0.073350 0.073350 0.0001377959 0.0001377959 FALSE  
ENST00000601879 ENSG00000064607 No_inf pgwt_inf SUGP2 protein_coding protein_coding 47.55837 51.20571 49.89557 4.126798 1.926778 -0.03738551 1.630060 3.625300 0.000000 0.2663962 0.0000000 -8.50593069 0.03454167 0.072325 0.000000 -0.072325 0.0002595307 0.0001377959 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000064607 E001 0.5248228 0.0159999268 4.004003e-02   19 18990888 18990889 2 - 0.000 0.302 11.077
ENSG00000064607 E002 0.6387730 0.0152410105 1.564558e-01   19 18990890 18990892 3 - 0.093 0.302 2.076
ENSG00000064607 E003 1.7349785 0.0212102191 5.385543e-01 8.040332e-01 19 18990893 18990895 3 - 0.386 0.479 0.492
ENSG00000064607 E004 58.0597516 0.0005053855 4.950260e-02 2.460806e-01 19 18990896 18991149 254 - 1.728 1.807 0.267
ENSG00000064607 E005 28.6741290 0.0005212891 5.062549e-02 2.496521e-01 19 18991150 18991267 118 - 1.412 1.521 0.376
ENSG00000064607 E006 23.5629694 0.0051795098 3.217313e-02 1.917529e-01 19 18991268 18991339 72 - 1.308 1.453 0.505
ENSG00000064607 E007 45.5630858 0.0003156989 3.802543e-03 4.797458e-02 19 18991340 18991553 214 - 1.595 1.725 0.439
ENSG00000064607 E008 44.0288802 0.0003682435 9.273330e-03 8.847664e-02 19 18991554 18991742 189 - 1.587 1.706 0.402
ENSG00000064607 E009 77.2493483 0.0002171349 1.422018e-04 3.909334e-03 19 18991743 18992366 624 - 1.820 1.951 0.439
ENSG00000064607 E010 63.8999848 0.0098376359 3.698697e-02 2.091044e-01 19 18992367 18992924 558 - 1.749 1.863 0.385
ENSG00000064607 E011 55.3263201 0.0002640907 1.460645e-02 1.185077e-01 19 18992925 18993276 352 - 1.696 1.795 0.335
ENSG00000064607 E012 32.1280510 0.0081899062 3.563136e-01 6.763181e-01 19 18993277 18993461 185 - 1.489 1.546 0.198
ENSG00000064607 E013 30.1325759 0.0006215753 4.001792e-01 7.117127e-01 19 18993462 18993637 176 - 1.468 1.514 0.159
ENSG00000064607 E014 14.0625965 0.0181416769 4.267539e-01 7.310077e-01 19 18993638 18993647 10 - 1.135 1.213 0.280
ENSG00000064607 E015 45.9847179 0.0003177232 3.119059e-01 6.379665e-01 19 18993648 18993740 93 - 1.647 1.693 0.154
ENSG00000064607 E016 22.7655631 0.0006360783 5.040246e-02 2.489917e-01 19 18993741 18994365 625 - 1.308 1.430 0.423
ENSG00000064607 E017 47.9024719 0.0045111734 5.627924e-01 8.174303e-01 19 18994366 18994486 121 - 1.704 1.674 -0.101
ENSG00000064607 E018 23.8193835 0.0103516419 6.510479e-01 8.633692e-01 19 18994487 18994597 111 - 1.412 1.378 -0.116
ENSG00000064607 E019 70.8908959 0.0004687368 3.264475e-01 6.508763e-01 19 18994598 18995143 546 - 1.837 1.873 0.121
ENSG00000064607 E020 32.2362038 0.0004230258 1.068310e-01 3.774782e-01 19 18995144 18995280 137 - 1.563 1.479 -0.285
ENSG00000064607 E021 1.4903048 0.1734607029 5.383951e-01 8.040118e-01 19 18998924 18998985 62 - 0.341 0.441 0.562
ENSG00000064607 E022 28.7030132 0.0118880040 8.714989e-03 8.476437e-02 19 19001613 19001674 62 - 1.560 1.373 -0.641
ENSG00000064607 E023 2.1890400 0.0229963590 7.271683e-01 9.003081e-01 19 19003496 19003608 113 - 0.529 0.479 -0.245
ENSG00000064607 E024 26.7657159 0.0005115744 1.733472e-02 1.323692e-01 19 19004168 19004273 106 - 1.508 1.373 -0.465
ENSG00000064607 E025 40.2982743 0.0003585878 1.893273e-06 9.911862e-05 19 19004274 19004429 156 - 1.718 1.494 -0.765
ENSG00000064607 E026 50.9620187 0.0003531537 5.026561e-03 5.842786e-02 19 19004430 19004646 217 - 1.772 1.656 -0.395
ENSG00000064607 E027 0.2454580 0.0164921311 9.684741e-01   19 19007347 19007447 101 - 0.093 0.097 0.076
ENSG00000064607 E028 33.2742042 0.0004251265 2.251230e-01 5.493753e-01 19 19008317 19008428 112 - 1.565 1.504 -0.210
ENSG00000064607 E029 121.1250373 0.0001301675 1.460864e-02 1.185077e-01 19 19009855 19010342 488 - 2.119 2.055 -0.215
ENSG00000064607 E030 34.4554260 0.0014888803 2.608421e-02 1.702577e-01 19 19019109 19019229 121 - 1.606 1.490 -0.395
ENSG00000064607 E031 173.5294726 0.0005757660 6.086061e-01 8.418463e-01 19 19024619 19025456 838 - 2.247 2.236 -0.038
ENSG00000064607 E032 40.6955681 0.0100926304 2.967227e-01 6.245022e-01 19 19025457 19025556 100 - 1.652 1.588 -0.219
ENSG00000064607 E033 67.6464381 0.0002201849 2.086094e-02 1.479102e-01 19 19025557 19025854 298 - 1.877 1.795 -0.278
ENSG00000064607 E034 30.8717052 0.0006451989 8.616630e-02 3.360435e-01 19 19025855 19026013 159 - 1.548 1.457 -0.312
ENSG00000064607 E035 44.9462253 0.0006144428 9.300955e-01 9.804503e-01 19 19026014 19026226 213 - 1.663 1.660 -0.010
ENSG00000064607 E036 26.3402561 0.0020226785 3.433915e-01 6.646231e-01 19 19030951 19031082 132 - 1.464 1.409 -0.191
ENSG00000064607 E037 0.0000000       19 19031083 19031107 25 -      
ENSG00000064607 E038 0.2450383 0.0164874502 9.684079e-01   19 19033048 19033436 389 - 0.093 0.097 0.076
ENSG00000064607 E039 8.5444336 0.0017662003 2.005410e-01 5.190094e-01 19 19033437 19033488 52 - 0.911 1.034 0.455
ENSG00000064607 E040 1.8317650 0.0075685786 8.744651e-01 9.604463e-01 19 19033489 19033761 273 - 0.464 0.441 -0.116
ENSG00000064607 E041 0.0000000       19 19033762 19034023 262 -      

Help

Please Click HERE to learn more details about the results from DEXseq.