ENSG00000068438

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000019019 ENSG00000068438 No_inf pgwt_inf FTSJ1 protein_coding protein_coding 20.91811 14.46301 22.1379 0.6066416 1.190632 0.6138046 0.9795043 0.5620107 2.195585 0.3612163 0.7451203 1.9470471 0.0496250 0.041625 0.099775 0.058150 9.928472e-01 1.627441e-05 FALSE TRUE
ENST00000348411 ENSG00000068438 No_inf pgwt_inf FTSJ1 protein_coding protein_coding 20.91811 14.46301 22.1379 0.6066416 1.190632 0.6138046 10.0742015 4.1256735 13.042729 1.4169346 0.6832769 1.6581573 0.4564417 0.274175 0.594800 0.320625 9.606631e-01 1.627441e-05 FALSE TRUE
ENST00000466371 ENSG00000068438 No_inf pgwt_inf FTSJ1 protein_coding protein_coding_CDS_not_defined 20.91811 14.46301 22.1379 0.6066416 1.190632 0.6138046 1.8378171 0.0000000 2.889752 0.0000000 1.6791799 8.1797857 0.0763000 0.000000 0.125475 0.125475 9.928472e-01 1.627441e-05 FALSE TRUE
ENST00000496365 ENSG00000068438 No_inf pgwt_inf FTSJ1 protein_coding protein_coding_CDS_not_defined 20.91811 14.46301 22.1379 0.6066416 1.190632 0.6138046 2.2307342 4.3512291 0.000000 0.6128634 0.0000000 -8.7685910 0.1334917 0.306600 0.000000 -0.306600 1.627441e-05 1.627441e-05 FALSE TRUE
MSTRG.29941.8 ENSG00000068438 No_inf pgwt_inf FTSJ1 protein_coding   20.91811 14.46301 22.1379 0.6066416 1.190632 0.6138046 3.2962181 3.6262490 2.823549 0.5132037 0.9626584 -0.3598411 0.1731917 0.256150 0.126550 -0.129600 9.737145e-01 1.627441e-05 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000068438 E001 0.2287699 0.0153370955 0.478280176   X 48476021 48476152 132 + 0.139 0.000 -9.472
ENSG00000068438 E002 0.3596331 0.0165785940 1.000000000   X 48476153 48476160 8 + 0.139 0.120 -0.255
ENSG00000068438 E003 0.9483188 0.0131541401 0.463893358 0.75686888 X 48476161 48476198 38 + 0.329 0.213 -0.840
ENSG00000068438 E004 1.0622690 0.0115272605 0.335349150 0.65834243 X 48476199 48476202 4 + 0.366 0.213 -1.062
ENSG00000068438 E005 1.6658432 0.0082341235 0.493581863 0.77629954 X 48476203 48476217 15 + 0.461 0.356 -0.577
ENSG00000068438 E006 3.5261976 0.0084304536 0.043850253 0.23014530 X 48476218 48476259 42 + 0.743 0.463 -1.255
ENSG00000068438 E007 3.0527585 0.0075938536 0.048144080 0.24216190 X 48476260 48476270 11 + 0.696 0.412 -1.325
ENSG00000068438 E008 8.1849287 0.0018611199 0.046823556 0.23844802 X 48476271 48476396 126 + 1.027 0.826 -0.757
ENSG00000068438 E009 0.4737248 0.0154326503 0.629264631   X 48476563 48476668 106 + 0.195 0.120 -0.840
ENSG00000068438 E010 5.4230027 0.0027058487 0.023086616 0.15773180 X 48477961 48478009 49 + 0.892 0.620 -1.103
ENSG00000068438 E011 14.0854129 0.0013556129 0.116720164 0.39526505 X 48478010 48478168 159 + 1.218 1.094 -0.442
ENSG00000068438 E012 1.2271804 0.0135433130 0.421750544 0.72762591 X 48478169 48478448 280 + 0.289 0.412 0.745
ENSG00000068438 E013 13.0099916 0.0015235439 0.950475814 0.98757205 X 48478449 48478518 70 + 1.142 1.136 -0.020
ENSG00000068438 E014 13.0130374 0.0010974965 0.947687399 0.98673583 X 48478617 48478680 64 + 1.142 1.136 -0.020
ENSG00000068438 E015 8.5781487 0.0237818589 0.203665427 0.52275445 X 48478681 48478707 27 + 1.027 0.884 -0.535
ENSG00000068438 E016 11.7165192 0.0157225118 0.311278255 0.63739701 X 48479038 48479116 79 + 1.136 1.034 -0.367
ENSG00000068438 E017 8.6936669 0.0480525050 0.285598633 0.61329708 X 48481151 48481164 14 + 1.035 0.884 -0.563
ENSG00000068438 E018 11.1429863 0.0034995432 0.016726397 0.12930501 X 48481165 48481203 39 + 1.153 0.935 -0.799
ENSG00000068438 E019 11.6341965 0.0012353155 0.022349700 0.15466773 X 48481289 48481342 54 + 1.165 0.966 -0.724
ENSG00000068438 E020 11.6792861 0.0012548379 0.194469467 0.51056023 X 48481426 48481481 56 + 1.050 1.156 0.383
ENSG00000068438 E021 12.1747794 0.0012637950 0.003839818 0.04831745 X 48481482 48481528 47 + 1.003 1.235 0.833
ENSG00000068438 E022 0.9007242 0.0167767411 0.009099885 0.08733074 X 48481529 48481631 103 + 0.075 0.463 3.330
ENSG00000068438 E023 14.1353550 0.0144371162 0.161263423 0.46435297 X 48481632 48481715 84 + 1.117 1.243 0.446
ENSG00000068438 E024 4.8059397 0.0460748898 0.762633787 0.91572996 X 48482403 48482408 6 + 0.772 0.735 -0.147
ENSG00000068438 E025 7.2092638 0.0340680399 0.699857720 0.88669694 X 48482409 48482419 11 + 0.923 0.884 -0.147
ENSG00000068438 E026 12.6977337 0.0038217324 0.072872879 0.30662983 X 48482420 48482506 87 + 1.064 1.210 0.523
ENSG00000068438 E027 21.9626751 0.0006606450 0.185908974 0.49980303 X 48482597 48482794 198 + 1.319 1.400 0.279
ENSG00000068438 E028 5.9542220 0.0200776711 0.461957052 0.75555716 X 48482795 48482985 191 + 0.799 0.884 0.330
ENSG00000068438 E029 7.9491079 0.0366275166 0.160949310 0.46395531 X 48482986 48483027 42 + 0.871 1.034 0.612
ENSG00000068438 E030 0.7538160 0.5919662329 0.565048997 0.81853197 X 48483241 48483341 101 + 0.139 0.356 1.747
ENSG00000068438 E031 47.7997704 0.0003221193 0.043188153 0.22821882 X 48485736 48486364 629 + 1.646 1.727 0.273

Help

Please Click HERE to learn more details about the results from DEXseq.