ENSG00000072274

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000360110 ENSG00000072274 No_inf pgwt_inf TFRC protein_coding protein_coding 122.2479 39.4414 162.4962 1.237577 1.740384 2.042346 67.0077284 12.463811 95.94531 1.9351973 2.943374 2.9434603 0.48830000 0.312275 0.590800 0.278525 5.020820e-01 8.878914e-05 FALSE TRUE
ENST00000420415 ENSG00000072274 No_inf pgwt_inf TFRC protein_coding protein_coding 122.2479 39.4414 162.4962 1.237577 1.740384 2.042346 0.7968739 2.390622 0.00000 2.3906218 0.000000 -7.9072643 0.02220833 0.066625 0.000000 -0.066625 9.928472e-01 8.878914e-05 FALSE TRUE
ENST00000483983 ENSG00000072274 No_inf pgwt_inf TFRC protein_coding retained_intron 122.2479 39.4414 162.4962 1.237577 1.740384 2.042346 13.5204092 10.749048 18.85853 2.6606972 3.453281 0.8104319 0.15258333 0.274375 0.116725 -0.157650 9.729762e-01 8.878914e-05 FALSE TRUE
ENST00000698293 ENSG00000072274 No_inf pgwt_inf TFRC protein_coding retained_intron 122.2479 39.4414 162.4962 1.237577 1.740384 2.042346 0.7503390 2.153216 0.00000 0.5624955 0.000000 -7.7570337 0.01850000 0.054900 0.000000 -0.054900 8.878914e-05 8.878914e-05 TRUE TRUE
ENST00000698294 ENSG00000072274 No_inf pgwt_inf TFRC protein_coding protein_coding 122.2479 39.4414 162.4962 1.237577 1.740384 2.042346 33.1377736 4.789426 41.01958 1.8547014 5.350074 3.0957303 0.23154167 0.118075 0.251500 0.133425 9.928472e-01 8.878914e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000072274 E001 0.0000000       3 196012511 196013526 1016 -      
ENSG00000072274 E002 0.0000000       3 196019880 196020198 319 -      
ENSG00000072274 E003 0.1308632 0.0123269190 8.304874e-02   3 196026649 196027136 488 - 0.000 0.183 11.801
ENSG00000072274 E004 0.0000000       3 196027137 196027260 124 -      
ENSG00000072274 E005 0.7183133 0.0140846261 3.718105e-01 6.899685e-01 3 196038293 196039408 1116 - 0.164 0.311 1.195
ENSG00000072274 E006 5.1582508 0.0027064532 9.873596e-01 9.998525e-01 3 196049284 196049287 4 - 0.709 0.715 0.025
ENSG00000072274 E007 17.7510449 0.0014470554 4.761720e-02 2.407206e-01 3 196049288 196049314 27 - 1.144 1.309 0.584
ENSG00000072274 E008 88.2747345 0.0003252008 1.861483e-01 5.000440e-01 3 196049315 196049475 161 - 1.844 1.901 0.193
ENSG00000072274 E009 1666.5173548 0.0003154933 2.781584e-02 1.764195e-01 3 196049476 196052184 2709 - 3.122 3.141 0.065
ENSG00000072274 E010 0.4902786 0.1017369370 1.545197e-01   3 196052698 196053417 720 - 0.089 0.311 2.195
ENSG00000072274 E011 58.9521093 0.0002766513 4.766494e-01 7.655622e-01 3 196053418 196053491 74 - 1.675 1.714 0.133
ENSG00000072274 E012 61.0550556 0.0002315729 3.124292e-02 1.887421e-01 3 196053492 196053558 67 - 1.675 1.780 0.353
ENSG00000072274 E013 1.3591276 0.0097318800 7.283790e-03 7.553626e-02 3 196053559 196054295 737 - 0.196 0.617 2.458
ENSG00000072274 E014 0.2620121 0.0160846434 1.637814e-02   3 196054296 196054377 82 - 0.000 0.311 14.556
ENSG00000072274 E015 0.9983201 0.0417278236 7.338217e-03 7.589258e-02 3 196054378 196055079 702 - 0.128 0.559 2.932
ENSG00000072274 E016 105.0144729 0.0001371864 6.560920e-01 8.658237e-01 3 196055080 196055301 222 - 1.926 1.947 0.071
ENSG00000072274 E017 1.0355141 0.3620183278 3.349374e-03 4.391397e-02 3 196055302 196055561 260 - 0.047 0.669 5.004
ENSG00000072274 E018 0.6051519 0.0223998595 2.522675e-01   3 196057962 196058210 249 - 0.128 0.311 1.610
ENSG00000072274 E019 0.2620121 0.0160846434 1.637814e-02   3 196058211 196058282 72 - 0.000 0.311 14.556
ENSG00000072274 E020 0.0000000       3 196058283 196058283 1 -      
ENSG00000072274 E021 48.3224008 0.0005451048 1.234867e-01 4.070674e-01 3 196058284 196058365 82 - 1.614 1.532 -0.283
ENSG00000072274 E022 46.1602902 0.0039111727 3.065300e-01 6.331693e-01 3 196058574 196058632 59 - 1.591 1.532 -0.203
ENSG00000072274 E023 0.2462566 0.0163394384 2.361567e-01   3 196058633 196058958 326 - 0.047 0.183 2.195
ENSG00000072274 E024 0.5891054 0.2006273811 8.863324e-01   3 196059189 196059293 105 - 0.164 0.183 0.195
ENSG00000072274 E025 42.1389508 0.0046887799 6.162210e-01 8.457048e-01 3 196060180 196060247 68 - 1.547 1.518 -0.098
ENSG00000072274 E026 2.1130145 0.0298252807 3.975434e-04 8.807203e-03 3 196060248 196060721 474 - 0.255 0.795 2.710
ENSG00000072274 E027 0.6053059 0.0199109161 2.517591e-01   3 196062391 196062581 191 - 0.128 0.311 1.610
ENSG00000072274 E028 39.3590167 0.0017483015 8.096292e-01 9.352408e-01 3 196062582 196062645 64 - 1.514 1.504 -0.036
ENSG00000072274 E029 3.4061877 0.0045608454 4.221715e-09 3.857383e-07 3 196062646 196062853 208 - 0.282 1.040 3.443
ENSG00000072274 E030 45.2425729 0.0003275163 3.491493e-01 6.698569e-01 3 196062854 196062939 86 - 1.581 1.532 -0.168
ENSG00000072274 E031 1.0634904 0.0710221172 7.561129e-01 9.132881e-01 3 196062940 196063224 285 - 0.256 0.311 0.387
ENSG00000072274 E032 3.0238033 0.0084042656 1.216956e-02 1.056646e-01 3 196063225 196064023 799 - 0.434 0.795 1.610
ENSG00000072274 E033 1.0003158 0.1578668760 1.555444e-02 1.232422e-01 3 196064024 196064308 285 - 0.128 0.559 2.933
ENSG00000072274 E034 47.6607804 0.0064873402 7.052826e-01 8.897887e-01 3 196064309 196064428 120 - 1.597 1.576 -0.072
ENSG00000072274 E035 53.2673832 0.0002924676 8.197154e-01 9.384279e-01 3 196065443 196065600 158 - 1.637 1.653 0.056
ENSG00000072274 E036 0.6211390 0.0253656191 3.931174e-02   3 196065601 196066330 730 - 0.089 0.410 2.780
ENSG00000072274 E037 50.8769731 0.0003021505 6.546534e-03 7.001116e-02 3 196067518 196067657 140 - 1.647 1.497 -0.513
ENSG00000072274 E038 40.2426069 0.0031156122 1.260201e-01 4.114584e-01 3 196068032 196068130 99 - 1.540 1.443 -0.332
ENSG00000072274 E039 0.1316618 0.0122836950 8.306927e-02   3 196068131 196068426 296 - 0.000 0.183 13.631
ENSG00000072274 E040 44.4511901 0.0003787991 1.049277e-01 3.736628e-01 3 196069455 196069568 114 - 1.581 1.489 -0.312
ENSG00000072274 E041 1.9004383 0.0151479258 5.100011e-06 2.350167e-04 3 196069569 196071118 1550 - 0.164 0.830 3.654
ENSG00000072274 E042 0.3591269 0.2291980425 4.699747e-01   3 196071119 196071187 69 - 0.089 0.183 1.196
ENSG00000072274 E043 0.8324347 0.0133634725 4.990301e-01 7.799650e-01 3 196071188 196071395 208 - 0.196 0.311 0.873
ENSG00000072274 E044 31.5124070 0.0054894053 2.492637e-01 5.762093e-01 3 196071396 196071439 44 - 1.435 1.352 -0.287
ENSG00000072274 E045 33.4139441 0.0004148570 2.935067e-01 6.219284e-01 3 196071440 196071498 59 - 1.456 1.390 -0.226
ENSG00000072274 E046 56.8178483 0.0002500159 5.160003e-02 2.525110e-01 3 196072003 196072152 150 - 1.686 1.588 -0.332
ENSG00000072274 E047 73.1089566 0.0003262255 8.582694e-02 3.352880e-01 3 196073930 196074125 196 - 1.789 1.714 -0.252
ENSG00000072274 E048 0.3431399 0.0333527571 1.000000e+00   3 196074197 196074433 237 - 0.128 0.000 -12.956
ENSG00000072274 E049 69.8265759 0.0002122839 1.032044e-02 9.466789e-02 3 196075159 196075360 202 - 1.777 1.658 -0.401
ENSG00000072274 E050 27.5271015 0.0005221194 8.391461e-03 8.273943e-02 3 196077064 196077105 42 - 1.396 1.195 -0.705
ENSG00000072274 E051 21.3575093 0.0006286080 1.314513e-02 1.107685e-01 3 196077106 196077122 17 - 1.293 1.079 -0.761
ENSG00000072274 E052 0.4738660 0.0154583255 6.926464e-01   3 196081089 196081528 440 - 0.128 0.183 0.610
ENSG00000072274 E053 0.3592742 0.0166525145 4.610937e-01   3 196081831 196082042 212 - 0.089 0.183 1.195
ENSG00000072274 E054 17.0782746 0.0008022002 2.014040e-04 5.140265e-03 3 196082043 196082153 111 - 1.222 0.830 -1.444

Help

Please Click HERE to learn more details about the results from DEXseq.