ENSG00000083312

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000337273 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding protein_coding 33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 10.889406 5.713591 9.4999864 1.9643285 0.8922892 0.7325227 0.31880000 0.230525 0.267975 0.037450 0.9928472467 0.0005685305 FALSE TRUE
ENST00000503084 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding retained_intron 33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 1.597935 4.492580 0.3012262 0.7197683 0.3012262 -3.8547168 0.06396667 0.183825 0.008075 -0.175750 0.0398091631 0.0005685305   FALSE
ENST00000506351 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding protein_coding 33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 2.128632 3.049967 3.3359307 3.0499666 3.3359307 0.1288916 0.07272500 0.128800 0.089375 -0.039425 1.0000000000 0.0005685305 FALSE TRUE
ENST00000523768 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding protein_coding 33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 3.032038 0.000000 5.5947494 0.0000000 1.2604002 9.1305061 0.07748333 0.000000 0.146775 0.146775 0.0005685305 0.0005685305 FALSE TRUE
ENST00000605210 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding protein_coding 33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 5.348279 2.577979 6.0842843 0.8282610 1.7110726 1.2356307 0.15055000 0.101975 0.160600 0.058625 0.9928472467 0.0005685305 FALSE TRUE
MSTRG.23057.11 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding   33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 5.901340 4.417157 7.1618926 1.6227001 2.2362323 0.6959733 0.18200833 0.180900 0.206325 0.025425 1.0000000000 0.0005685305 FALSE TRUE
MSTRG.23057.5 ENSG00000083312 No_inf pgwt_inf TNPO1 protein_coding   33.2596 24.56751 36.75683 1.028493 2.737255 0.5810663 2.321982 3.090174 2.3878751 1.8098451 2.3878751 -0.3705927 0.07681667 0.126175 0.059100 -0.067075 0.9036108981 0.0005685305 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000083312 E001 0.0000000       5 72816312 72816623 312 +      
ENSG00000083312 E002 0.0000000       5 72816624 72816648 25 +      
ENSG00000083312 E003 0.0000000       5 72816649 72816660 12 +      
ENSG00000083312 E004 0.0000000       5 72816661 72816666 6 +      
ENSG00000083312 E005 0.0000000       5 72816667 72816668 2 +      
ENSG00000083312 E006 0.2279004 2.646297e-01 3.938037e-01   5 72816669 72816671 3 + 0.158 0.000 -10.071
ENSG00000083312 E007 1.5695439 8.731425e-03 6.775319e-01 8.758452e-01 5 72816672 72816694 23 + 0.439 0.375 -0.353
ENSG00000083312 E008 3.3676563 4.883348e-02 4.332126e-01 7.358266e-01 5 72816695 72816752 58 + 0.694 0.573 -0.523
ENSG00000083312 E009 0.2462566 1.625877e-02 8.570820e-01   5 72816793 72816954 162 + 0.086 0.105 0.325
ENSG00000083312 E010 0.1138060 1.114026e-02 6.770769e-01   5 72825735 72825821 87 + 0.086 0.000 -11.754
ENSG00000083312 E011 0.1316618 1.226432e-02 4.255541e-01   5 72848121 72848152 32 + 0.000 0.105 11.077
ENSG00000083312 E012 0.7529481 1.390832e-02 2.738236e-01 6.020626e-01 5 72848153 72848169 17 + 0.158 0.321 1.325
ENSG00000083312 E013 1.3403982 1.641613e-02 9.380131e-01 9.834178e-01 5 72848170 72848183 14 + 0.364 0.375 0.062
ENSG00000083312 E014 3.8578440 6.008903e-03 4.494987e-01 7.476404e-01 5 72848184 72848251 68 + 0.730 0.632 -0.412
ENSG00000083312 E015 13.9169587 8.056329e-03 1.154675e-03 1.997948e-02 5 72848385 72848498 114 + 1.287 1.002 -1.023
ENSG00000083312 E016 0.0000000       5 72851205 72851237 33 +      
ENSG00000083312 E017 1.3232296 3.146140e-02 6.124305e-01 8.435997e-01 5 72851238 72851243 6 + 0.403 0.321 -0.483
ENSG00000083312 E018 11.4709805 1.189567e-03 9.898011e-03 9.200592e-02 5 72851244 72851319 76 + 1.189 0.965 -0.813
ENSG00000083312 E019 15.7458202 8.848762e-04 3.534213e-02 2.031149e-01 5 72855774 72855923 150 + 1.292 1.134 -0.561
ENSG00000083312 E020 13.3386441 2.179722e-03 5.693265e-02 2.668250e-01 5 72861808 72861914 107 + 1.224 1.068 -0.560
ENSG00000083312 E021 0.0000000       5 72861915 72861915 1 +      
ENSG00000083312 E022 0.0000000       5 72862354 72862396 43 +      
ENSG00000083312 E023 18.2087343 7.544595e-04 4.609160e-03 5.497234e-02 5 72865596 72865729 134 + 1.368 1.167 -0.704
ENSG00000083312 E024 0.0000000       5 72865730 72865731 2 +      
ENSG00000083312 E025 0.5265004 2.183840e-01 4.903442e-02   5 72871747 72871889 143 + 0.000 0.321 12.304
ENSG00000083312 E026 6.6812434 2.284354e-03 3.543675e-02 2.034384e-01 5 72872639 72872667 29 + 0.979 0.753 -0.873
ENSG00000083312 E027 9.8963970 3.991646e-03 1.064730e-02 9.665231e-02 5 72872668 72872720 53 + 1.136 0.895 -0.889
ENSG00000083312 E028 19.2232057 2.751103e-02 1.419123e-02 1.165544e-01 5 72875615 72875737 123 + 1.403 1.167 -0.826
ENSG00000083312 E029 16.9151291 3.847058e-03 1.942613e-02 1.414035e-01 5 72877228 72877346 119 + 1.329 1.151 -0.629
ENSG00000083312 E030 10.8355229 4.629367e-02 2.688503e-01 5.970027e-01 5 72882467 72882527 61 + 1.129 1.002 -0.464
ENSG00000083312 E031 26.9607754 4.717691e-03 8.577344e-05 2.600439e-03 5 72883064 72883232 169 + 1.551 1.293 -0.892
ENSG00000083312 E032 33.3195175 5.064906e-04 5.107544e-02 2.508689e-01 5 72887070 72887222 153 + 1.582 1.478 -0.357
ENSG00000083312 E033 40.7147733 3.800488e-04 2.421845e-01 5.684477e-01 5 72888078 72888303 226 + 1.647 1.589 -0.196
ENSG00000083312 E034 30.1183087 4.467950e-04 1.546515e-01 4.552669e-01 5 72889786 72889957 172 + 1.529 1.449 -0.275
ENSG00000083312 E035 20.1821903 6.807050e-04 1.694532e-02 1.303668e-01 5 72891810 72891896 87 + 1.395 1.235 -0.561
ENSG00000083312 E036 19.0717650 8.379747e-04 8.929526e-03 8.625051e-02 5 72893139 72893246 108 + 1.380 1.199 -0.635
ENSG00000083312 E037 30.6425389 4.593512e-04 2.593604e-01 5.870358e-01 5 72893377 72893535 159 + 1.529 1.466 -0.217
ENSG00000083312 E038 25.5841266 6.278976e-03 1.394239e-02 1.153414e-01 5 72893616 72893675 60 + 1.497 1.328 -0.585
ENSG00000083312 E039 17.0208134 1.677957e-02 2.613814e-01 5.890475e-01 5 72893676 72893703 28 + 1.302 1.199 -0.363
ENSG00000083312 E040 0.7702214 1.654910e-01 8.477272e-02 3.331438e-01 5 72895459 72896457 999 + 0.086 0.375 2.647
ENSG00000083312 E041 31.6080166 1.125199e-02 1.037582e-01 3.710662e-01 5 72896458 72896556 99 + 1.564 1.449 -0.395
ENSG00000083312 E042 30.8364742 8.185587e-03 4.179558e-02 2.242247e-01 5 72897056 72897151 96 + 1.562 1.427 -0.461
ENSG00000083312 E043 22.6617704 9.412954e-03 1.009843e-01 3.662463e-01 5 72900006 72900081 76 + 1.428 1.305 -0.428
ENSG00000083312 E044 0.2449549 1.605290e-02 8.573203e-01   5 72900151 72900224 74 + 0.086 0.105 0.325
ENSG00000083312 E045 0.0000000       5 72900874 72900973 100 +      
ENSG00000083312 E046 29.3821114 1.512779e-02 2.845387e-01 6.123077e-01 5 72900974 72901073 100 + 1.521 1.436 -0.290
ENSG00000083312 E047 24.7732723 6.846171e-04 1.345115e-01 4.250152e-01 5 72903709 72903783 75 + 1.452 1.360 -0.319
ENSG00000083312 E048 26.6471908 5.127064e-04 2.519010e-03 3.591839e-02 5 72905303 72905445 143 + 1.518 1.339 -0.617
ENSG00000083312 E049 0.9813458 1.180344e-02 7.462370e-01 9.090175e-01 5 72905446 72905580 135 + 0.273 0.321 0.325
ENSG00000083312 E050 910.6568109 6.249748e-05 1.584014e-41 2.050950e-38 5 72908709 72916154 7446 + 2.918 3.001 0.276
ENSG00000083312 E051 0.8512081 1.642367e-02 9.428657e-01 9.855516e-01 5 72916155 72916733 579 + 0.273 0.261 -0.090

Help

Please Click HERE to learn more details about the results from DEXseq.