ENSG00000086102

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000318524 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding protein_coding 38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 9.997797 12.5443841 10.181802 4.3073118 3.7945056 -0.3007820 0.25546667 0.317275 0.265475 -0.051800 1.00000000 0.03504981 FALSE TRUE
ENST00000379540 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding protein_coding 38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 6.775007 0.4680275 9.025141 0.4680275 0.9445692 4.2403817 0.17578333 0.012325 0.239350 0.227025 0.03504981 0.03504981 FALSE TRUE
MSTRG.28603.1 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding   38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 5.300506 3.4547934 5.198827 3.4547934 2.4210775 0.5881891 0.13917500 0.091725 0.140000 0.048275 0.86783953 0.03504981 FALSE TRUE
MSTRG.28603.2 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding   38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 2.804018 3.4765404 3.151990 0.3350885 0.1888305 -0.1409636 0.07260000 0.088925 0.083625 -0.005300 1.00000000 0.03504981 TRUE TRUE
MSTRG.28603.7 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding   38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 3.397774 2.8140653 2.229394 0.9926594 1.2980967 -0.3346651 0.08674167 0.071275 0.058775 -0.012500 0.99284725 0.03504981 FALSE TRUE
MSTRG.28603.8 ENSG00000086102 No_inf pgwt_inf NFX1 protein_coding   38.7983 39.15162 37.89312 0.7933847 0.9073179 -0.04712395 10.059474 16.0448097 7.669286 0.3755578 1.3062881 -1.0639615 0.25850000 0.409950 0.201400 -0.208550 0.68038205 0.03504981 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000086102 E001 0.6400029 0.1588581176 0.202855431   9 33290509 33290511 3 + 0.093 0.303 2.086
ENSG00000086102 E002 0.7708661 0.1186162659 0.108635691 0.38049471 9 33290512 33290515 4 + 0.093 0.354 2.408
ENSG00000086102 E003 1.6554577 0.0854103676 0.066304120 0.29142412 9 33290516 33290544 29 + 0.234 0.547 1.823
ENSG00000086102 E004 6.7906704 0.0029165832 0.379564128 0.69623269 9 33290545 33290597 53 + 0.841 0.933 0.350
ENSG00000086102 E005 0.7532361 0.0406951773 0.382463430 0.69874569 9 33294400 33294419 20 + 0.169 0.303 1.087
ENSG00000086102 E006 125.3191615 0.0001191145 0.008078737 0.08072046 9 33294420 33295427 1008 + 2.135 2.067 -0.226
ENSG00000086102 E007 33.6396130 0.0007097918 0.770325302 0.91955407 9 33301263 33301421 159 + 1.547 1.532 -0.050
ENSG00000086102 E008 20.9768103 0.0087412234 0.481044858 0.76851132 9 33303191 33303268 78 + 1.368 1.316 -0.183
ENSG00000086102 E009 27.2894261 0.0005453613 0.872370781 0.95982663 9 33307194 33307299 106 + 1.456 1.447 -0.030
ENSG00000086102 E010 19.4680588 0.0078317642 0.983149143 0.99863049 9 33311106 33311177 72 + 1.311 1.310 -0.004
ENSG00000086102 E011 27.5739350 0.0005025952 0.080352483 0.32388701 9 33313654 33313793 140 + 1.504 1.406 -0.336
ENSG00000086102 E012 30.4050218 0.0017741856 0.001322380 0.02224588 9 33318731 33318830 100 + 1.581 1.402 -0.614
ENSG00000086102 E013 33.1065843 0.0004432964 0.001590598 0.02554098 9 33318910 33319020 111 + 1.609 1.447 -0.556
ENSG00000086102 E014 32.3845158 0.0004419694 0.719975530 0.89715162 9 33319021 33319127 107 + 1.513 1.532 0.065
ENSG00000086102 E015 26.1413111 0.0005398826 0.600116441 0.83767681 9 33328581 33328678 98 + 1.448 1.419 -0.102
ENSG00000086102 E016 15.2915436 0.0014856595 0.907778985 0.97275180 9 33332472 33332502 31 + 1.216 1.208 -0.029
ENSG00000086102 E017 0.3767001 0.0165711068 0.547558831   9 33332503 33332657 155 + 0.093 0.177 1.087
ENSG00000086102 E018 2.6035351 0.1242728008 0.564884348 0.81850180 9 33338507 33338509 3 + 0.497 0.605 0.501
ENSG00000086102 E019 27.3150084 0.0102017247 0.465821651 0.75801114 9 33338510 33338589 80 + 1.477 1.427 -0.172
ENSG00000086102 E020 27.5310661 0.0014632345 0.260414173 0.58801985 9 33342746 33342811 66 + 1.487 1.423 -0.221
ENSG00000086102 E021 21.9497570 0.0013619009 0.434602909 0.73701826 9 33342812 33342854 43 + 1.385 1.336 -0.171
ENSG00000086102 E022 42.3613747 0.0059308254 0.997979974 1.00000000 9 33344069 33344188 120 + 1.636 1.637 0.003
ENSG00000086102 E023 30.9044737 0.0004414877 0.730605875 0.90172464 9 33347038 33347117 80 + 1.494 1.512 0.064
ENSG00000086102 E024 6.1355705 0.0032507790 0.836761208 0.94563925 9 33347663 33347665 3 + 0.841 0.864 0.087
ENSG00000086102 E025 130.5191477 0.0001816034 0.007241001 0.07527391 9 33347666 33348995 1330 + 2.082 2.150 0.228
ENSG00000086102 E026 25.8578358 0.0053544469 0.312796029 0.63863275 9 33351560 33351790 231 + 1.394 1.459 0.224
ENSG00000086102 E027 0.0000000       9 33351791 33351882 92 +      
ENSG00000086102 E028 13.0800438 0.0021722720 0.112607723 0.38802815 9 33352646 33352719 74 + 1.210 1.083 -0.454
ENSG00000086102 E029 16.8248026 0.0008720634 0.052770833 0.25612780 9 33354086 33354187 102 + 1.316 1.180 -0.481
ENSG00000086102 E030 12.7616109 0.0084537405 0.782954126 0.92479942 9 33354851 33354892 42 + 1.126 1.150 0.087
ENSG00000086102 E031 18.0769398 0.0008257391 0.442932439 0.74280832 9 33364010 33364108 99 + 1.252 1.305 0.185
ENSG00000086102 E032 16.3880229 0.0010909441 0.025178615 0.16637191 9 33364708 33364774 67 + 1.148 1.310 0.572
ENSG00000086102 E033 9.2926798 0.0015179130 0.842173805 0.94781864 9 33364775 33365232 458 + 1.021 1.004 -0.065
ENSG00000086102 E034 14.4855034 0.0205051217 0.822797100 0.93981855 9 33365233 33366009 777 + 1.177 1.201 0.087
ENSG00000086102 E035 13.5013625 0.0211620467 0.155660643 0.45671980 9 33366010 33366628 619 + 1.085 1.221 0.486
ENSG00000086102 E036 33.7583607 0.0004158371 0.001520641 0.02467892 9 33366629 33366774 146 + 1.448 1.611 0.557
ENSG00000086102 E037 25.8156876 0.0005587553 0.849834784 0.95080159 9 33367515 33367619 105 + 1.434 1.423 -0.037
ENSG00000086102 E038 138.2515096 0.0001156336 0.024252535 0.16226015 9 33369906 33371157 1252 + 2.114 2.169 0.184

Help

Please Click HERE to learn more details about the results from DEXseq.