ENSG00000087903

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000303657 ENSG00000087903 No_inf pgwt_inf RFX2 protein_coding protein_coding 25.82208 32.52078 21.45858 12.09585 2.079991 -0.599579 2.341519 3.652344 0.8924769 0.2573128 0.8924769 -2.0208057 0.1154333 0.184375 0.049600 -0.134775 5.020820e-01 8.028942e-05 FALSE TRUE
ENST00000359161 ENSG00000087903 No_inf pgwt_inf RFX2 protein_coding protein_coding 25.82208 32.52078 21.45858 12.09585 2.079991 -0.599579 2.589477 0.000000 3.9211629 0.0000000 0.7586287 8.6188124 0.1139833 0.000000 0.179075 0.179075 8.028942e-05 8.028942e-05 FALSE TRUE
ENST00000590822 ENSG00000087903 No_inf pgwt_inf RFX2 protein_coding protein_coding_CDS_not_defined 25.82208 32.52078 21.45858 12.09585 2.079991 -0.599579 5.672685 2.079276 7.0889166 1.2269209 1.8337683 1.7645957 0.2526250 0.101100 0.322325 0.221225 7.877429e-01 8.028942e-05 FALSE FALSE
MSTRG.14384.2 ENSG00000087903 No_inf pgwt_inf RFX2 protein_coding   25.82208 32.52078 21.45858 12.09585 2.079991 -0.599579 3.735555 3.045155 5.0222446 0.4286690 0.6629026 0.7199563 0.1743500 0.152925 0.239875 0.086950 9.928472e-01 8.028942e-05 FALSE TRUE
MSTRG.14384.24 ENSG00000087903 No_inf pgwt_inf RFX2 protein_coding   25.82208 32.52078 21.45858 12.09585 2.079991 -0.599579 6.772131 20.316393 0.0000000 12.7305680 0.0000000 -10.9891385 0.1272833 0.381850 0.000000 -0.381850 9.727259e-01 8.028942e-05   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000087903 E001 0.0000000       19 5993164 5993166 3 -      
ENSG00000087903 E002 7.5305970 0.0074336684 0.07882525 0.32038552 19 5993167 5993516 350 - 0.837 1.019 0.686
ENSG00000087903 E003 58.7896010 0.0004449353 0.87198213 0.95963860 19 5993517 5994501 985 - 1.771 1.780 0.028
ENSG00000087903 E004 21.0633383 0.0040776226 0.58901637 0.83216296 19 5994502 5994815 314 - 1.325 1.362 0.130
ENSG00000087903 E005 10.0823379 0.0018923413 0.13681057 0.42857807 19 5994816 5994950 135 - 1.098 0.968 -0.475
ENSG00000087903 E006 6.1901506 0.0198932695 0.06727814 0.29379046 19 5995601 5995643 43 - 0.942 0.723 -0.854
ENSG00000087903 E007 12.1936877 0.0019447302 0.43528762 0.73746341 19 5997060 5997213 154 - 1.146 1.085 -0.220
ENSG00000087903 E008 0.4906503 0.0162633289 0.76179648   19 5997214 5997373 160 - 0.152 0.196 0.449
ENSG00000087903 E009 13.9766547 0.0013403024 0.23269897 0.55830505 19 6001815 6002023 209 - 1.212 1.124 -0.315
ENSG00000087903 E010 3.4824447 0.0044942360 0.38474608 0.70005218 19 6002721 6002721 1 - 0.697 0.587 -0.477
ENSG00000087903 E011 8.2697720 0.0017065065 0.12009574 0.40104437 19 6002722 6002870 149 - 1.027 0.880 -0.551
ENSG00000087903 E012 4.4448090 0.0065563614 0.37145292 0.68964257 19 6004201 6004298 98 - 0.780 0.674 -0.436
ENSG00000087903 E013 5.4918446 0.0249154863 0.12421099 0.40831411 19 6007012 6007166 155 - 0.887 0.699 -0.744
ENSG00000087903 E014 4.3819744 0.0383783752 0.85384284 0.95241391 19 6007690 6007774 85 - 0.715 0.746 0.126
ENSG00000087903 E015 2.5045870 0.0886965785 0.09993285 0.36452333 19 6007775 6007802 28 - 0.392 0.674 1.341
ENSG00000087903 E016 1.9455820 0.0079409894 0.91727846 0.97568617 19 6007866 6008077 212 - 0.460 0.477 0.086
ENSG00000087903 E017 0.6036576 0.0212466133 0.91302473   19 6008078 6008105 28 - 0.212 0.196 -0.136
ENSG00000087903 E018 5.0050403 0.0029971192 0.61773306 0.84642329 19 6008106 6008188 83 - 0.749 0.808 0.237
ENSG00000087903 E019 4.1554507 0.0127116178 0.61140079 0.84327910 19 6008189 6008224 36 - 0.679 0.746 0.279
ENSG00000087903 E020 0.3764729 0.1327704305 0.44271490   19 6008225 6008226 2 - 0.083 0.196 1.449
ENSG00000087903 E021 5.0698127 0.0031104280 0.56722534 0.81942260 19 6010136 6010181 46 - 0.809 0.746 -0.252
ENSG00000087903 E022 5.7408211 0.0030857486 0.55060974 0.81116969 19 6010182 6010251 70 - 0.795 0.863 0.264
ENSG00000087903 E023 5.4928558 0.0275119284 0.62687051 0.85059226 19 6012986 6013038 53 - 0.780 0.845 0.256
ENSG00000087903 E024 6.9609572 0.0090196314 0.23363347 0.55903121 19 6013039 6013105 67 - 0.952 0.827 -0.477
ENSG00000087903 E025 7.8472187 0.0035966056 0.51806950 0.79139400 19 6016090 6016271 182 - 0.972 0.911 -0.229
ENSG00000087903 E026 0.1315150 0.0122658537 0.39451995   19 6023096 6023205 110 - 0.000 0.109 10.171
ENSG00000087903 E027 2.2094719 0.0066736305 0.52270455 0.79432467 19 6026163 6026195 33 - 0.460 0.553 0.449
ENSG00000087903 E028 2.4747308 0.0558161206 0.32289904 0.64743234 19 6026196 6026237 42 - 0.460 0.618 0.738
ENSG00000087903 E029 2.4736039 0.0427520161 0.30190889 0.62897977 19 6026238 6026521 284 - 0.460 0.618 0.738
ENSG00000087903 E030 1.2893934 0.0100104683 0.08951279 0.34344517 19 6026522 6026699 178 - 0.460 0.196 -1.721
ENSG00000087903 E031 1.1932862 0.0102085869 0.42187343 0.72772831 19 6027164 6027334 171 - 0.392 0.269 -0.774
ENSG00000087903 E032 2.5713283 0.0622592002 0.67241147 0.87348373 19 6039980 6040034 55 - 0.519 0.587 0.311
ENSG00000087903 E033 2.3397312 0.0137199532 0.38188653 0.69810014 19 6040035 6040073 39 - 0.460 0.587 0.601
ENSG00000087903 E034 1.4896093 0.0469198778 0.29553557 0.62349953 19 6040074 6040085 12 - 0.311 0.477 0.934
ENSG00000087903 E035 4.6644443 0.0481671387 0.41374120 0.72145602 19 6040086 6040185 100 - 0.697 0.808 0.448
ENSG00000087903 E036 3.1914666 0.0049452410 0.44322579 0.74308629 19 6040186 6040202 17 - 0.571 0.674 0.449
ENSG00000087903 E037 3.5320859 0.0219492225 0.81469715 0.93677467 19 6040203 6040241 39 - 0.639 0.674 0.149
ENSG00000087903 E038 2.9917154 0.0297109733 0.31719555 0.64272084 19 6042044 6042123 80 - 0.659 0.517 -0.639
ENSG00000087903 E039 2.7818281 0.0156198317 0.75917406 0.91451551 19 6044193 6044282 90 - 0.595 0.553 -0.189
ENSG00000087903 E040 2.3064408 0.0864969710 0.97295546 0.99528497 19 6047407 6047504 98 - 0.519 0.517 -0.011
ENSG00000087903 E041 0.0000000       19 6049136 6049232 97 -      
ENSG00000087903 E042 0.1139502 0.0111116404 0.72814113   19 6056450 6056477 28 - 0.083 0.000 -10.278
ENSG00000087903 E043 0.0000000       19 6057162 6057283 122 -      
ENSG00000087903 E044 0.7188360 0.2460247819 0.69247826 0.88312356 19 6072005 6072147 143 - 0.264 0.197 -0.550
ENSG00000087903 E045 0.4903592 0.0163214120 0.76291361   19 6078101 6078162 62 - 0.152 0.196 0.449
ENSG00000087903 E046 3.6292916 0.0060894696 0.78691886 0.92614450 19 6078163 6078334 172 - 0.679 0.647 -0.136
ENSG00000087903 E047 0.2457437 0.0161668910 0.81336079   19 6095476 6095530 55 - 0.083 0.109 0.449
ENSG00000087903 E048 4.9728532 0.0618301073 0.93984997 0.98431973 19 6110393 6110601 209 - 0.780 0.768 -0.049
ENSG00000087903 E049 0.0000000       19 6113562 6113761 200 -      
ENSG00000087903 E050 0.0000000       19 6148231 6148329 99 -      
ENSG00000087903 E051 0.0000000       19 6175873 6176255 383 -      
ENSG00000087903 E052 0.0000000       19 6176256 6176274 19 -      
ENSG00000087903 E053 0.0000000       19 6176275 6176443 169 -      
ENSG00000087903 E054 5.9963545 0.0321014606 0.01693961 0.13034588 19 6189728 6191325 1598 - 0.679 0.981 1.185
ENSG00000087903 E055 1.8339904 0.0485971890 0.74754623 0.90955578 19 6191326 6191569 244 - 0.428 0.477 0.256
ENSG00000087903 E056 0.2457437 0.0161668910 0.81336079   19 6191570 6191594 25 - 0.083 0.109 0.449
ENSG00000087903 E057 1.7887887 0.0187284914 0.00725559 0.07533621 19 6191595 6191864 270 - 0.212 0.618 2.323
ENSG00000087903 E058 0.2456120 0.0161347186 0.81247330   19 6191865 6192029 165 - 0.083 0.109 0.449
ENSG00000087903 E059 0.0000000       19 6192030 6192053 24 -      
ENSG00000087903 E060 0.0000000       19 6199476 6199479 4 -      
ENSG00000087903 E061 0.0000000       19 6199480 6199572 93 -      

Help

Please Click HERE to learn more details about the results from DEXseq.