ENSG00000090060

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000216277 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 46.374635 32.220726 49.613603 2.6062714 2.8468316 0.6225898 0.55738333 0.411125 0.680575 0.269450 4.885531e-01 4.023343e-08 FALSE TRUE
ENST00000553461 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 4.726913 6.733790 3.381062 0.9230311 1.4998388 -0.9918223 0.05692500 0.085850 0.045475 -0.040375 9.928472e-01 4.023343e-08 FALSE FALSE
ENST00000553940 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding retained_intron 83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 5.822941 17.179173 0.000000 1.7513699 0.0000000 -10.7472844 0.07462500 0.220775 0.000000 -0.220775 4.023343e-08 4.023343e-08   FALSE
ENST00000556459 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 6.465386 5.861702 3.919664 0.8670226 0.8535270 -0.5793728 0.07505000 0.075175 0.053425 -0.021750 9.928472e-01 4.023343e-08 FALSE TRUE
ENST00000557320 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 4.091899 4.772331 3.398857 0.2204646 0.2321022 -0.4884258 0.05001667 0.061025 0.046700 -0.014325 9.928472e-01 4.023343e-08 FALSE TRUE
MSTRG.9035.2 ENSG00000090060 No_inf pgwt_inf PAPOLA protein_coding   83.35305 78.13345 72.86263 1.29513 1.319603 -0.1007478 5.606369 2.075726 6.221977 1.3448292 2.9353452 1.5791402 0.06846667 0.026825 0.086900 0.060075 9.928472e-01 4.023343e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000090060 E001 0.0000000       14 96501433 96501589 157 +      
ENSG00000090060 E002 0.1308632 0.0122436817 4.538902e-01   14 96502376 96502381 6 + 0.000 0.104 9.528
ENSG00000090060 E003 0.6389948 0.0142535780 1.221178e-01   14 96502382 96502397 16 + 0.087 0.318 2.285
ENSG00000090060 E004 1.1294983 0.0107963812 2.125362e-01 5.345006e-01 14 96502398 96502400 3 + 0.222 0.419 1.285
ENSG00000090060 E005 1.2611601 0.0099043786 1.264159e-01 4.120665e-01 14 96502401 96502411 11 + 0.222 0.461 1.507
ENSG00000090060 E006 9.1779406 0.0125703201 7.180865e-01 8.962954e-01 14 96502412 96502440 29 + 0.985 1.031 0.169
ENSG00000090060 E007 22.4300708 0.0008195251 2.644190e-02 1.714246e-01 14 96502441 96502541 101 + 1.427 1.299 -0.444
ENSG00000090060 E008 12.1218240 0.0011353814 3.398373e-01 6.620598e-01 14 96502542 96502557 16 + 1.149 1.082 -0.240
ENSG00000090060 E009 25.5634107 0.0005949279 1.440721e-01 4.390729e-01 14 96502558 96502600 43 + 1.458 1.384 -0.255
ENSG00000090060 E010 0.3592742 0.0166863536 6.940079e-01   14 96502851 96502954 104 + 0.159 0.104 -0.715
ENSG00000090060 E011 0.1311489 0.0123595483 4.537903e-01   14 96504289 96504699 411 + 0.000 0.104 11.756
ENSG00000090060 E012 81.1059802 0.0004491561 3.655983e-03 4.669911e-02 14 96520055 96520228 174 + 1.954 1.867 -0.291
ENSG00000090060 E013 0.0000000       14 96520964 96521005 42 +      
ENSG00000090060 E014 27.7609802 0.0024831788 1.713601e-01 4.796890e-01 14 96521006 96521015 10 + 1.491 1.422 -0.238
ENSG00000090060 E015 41.1711845 0.0028767892 6.290390e-02 2.826329e-01 14 96521016 96521062 47 + 1.663 1.580 -0.283
ENSG00000090060 E016 26.1892457 0.0054607145 2.276929e-01 5.526889e-01 14 96521063 96521072 10 + 1.465 1.399 -0.228
ENSG00000090060 E017 44.0938865 0.0003602058 4.971115e-02 2.467246e-01 14 96525310 96525391 82 + 1.689 1.613 -0.261
ENSG00000090060 E018 1.3413511 0.0152629819 9.845517e-01 9.991572e-01 14 96525981 96527429 1449 + 0.368 0.371 0.022
ENSG00000090060 E019 29.1296173 0.0004428750 2.506932e-01 5.777094e-01 14 96527430 96527441 12 + 1.503 1.452 -0.176
ENSG00000090060 E020 61.0580125 0.0002486366 3.285454e-05 1.167764e-03 14 96527442 96527539 98 + 1.859 1.710 -0.503
ENSG00000090060 E021 0.3767001 0.0166592565 4.844595e-01   14 96527540 96527952 413 + 0.087 0.188 1.285
ENSG00000090060 E022 51.4281951 0.0002559926 1.609784e-02 1.259685e-01 14 96527953 96528006 54 + 1.760 1.672 -0.300
ENSG00000090060 E023 71.9426025 0.0002965381 4.269356e-01 7.310412e-01 14 96531475 96531586 112 + 1.870 1.854 -0.054
ENSG00000090060 E024 1.7025222 0.0302385184 8.339463e-01 9.444251e-01 14 96531587 96532248 662 + 0.443 0.419 -0.130
ENSG00000090060 E025 56.0363797 0.0006545891 8.883113e-02 3.419644e-01 14 96532331 96532420 90 + 1.783 1.726 -0.194
ENSG00000090060 E026 59.9269238 0.0003942237 2.516201e-01 5.786191e-01 14 96532511 96532649 139 + 1.800 1.768 -0.110
ENSG00000090060 E027 35.2477965 0.0004203542 3.551772e-05 1.252820e-03 14 96532650 96534222 1573 + 1.438 1.659 0.756
ENSG00000090060 E028 9.3023055 0.0015213800 1.885536e-04 4.887480e-03 14 96534223 96534490 268 + 0.801 1.162 1.344
ENSG00000090060 E029 28.7837091 0.0004650942 7.117452e-02 3.027783e-01 14 96534491 96534563 73 + 1.416 1.528 0.383
ENSG00000090060 E030 12.0031714 0.0011220168 5.431673e-04 1.122842e-02 14 96534564 96534889 326 + 0.943 1.243 1.086
ENSG00000090060 E031 1.8492646 0.0076339534 5.641774e-01 8.181027e-01 14 96535525 96535878 354 + 0.407 0.500 0.477
ENSG00000090060 E032 31.7736694 0.0004336891 1.755441e-01 4.861491e-01 14 96535879 96535999 121 + 1.543 1.484 -0.205
ENSG00000090060 E033 0.4905643 0.1139419799 8.621541e-01   14 96536895 96536975 81 + 0.159 0.188 0.285
ENSG00000090060 E034 29.1605075 0.0004788819 7.209211e-03 7.507221e-02 14 96536976 96537060 85 + 1.541 1.403 -0.471
ENSG00000090060 E035 8.7335997 0.0015807422 8.911537e-06 3.851121e-04 14 96537061 96537901 841 + 0.717 1.162 1.681
ENSG00000090060 E036 2.9337562 0.0049947551 1.657100e-03 2.633796e-02 14 96541907 96542181 275 + 0.324 0.768 2.133
ENSG00000090060 E037 0.9985596 0.0376299778 3.630153e-01 6.825227e-01 14 96542182 96542242 61 + 0.222 0.371 1.022
ENSG00000090060 E038 25.3144306 0.0005608780 6.550048e-01 8.655236e-01 14 96542243 96542296 54 + 1.427 1.413 -0.050
ENSG00000090060 E039 1.9529769 0.0334052762 1.653560e-04 4.393439e-03 14 96542297 96542728 432 + 0.087 0.680 4.092
ENSG00000090060 E040 1.4274243 0.0101939893 1.679870e-03 2.659635e-02 14 96542729 96542773 45 + 0.087 0.568 3.607
ENSG00000090060 E041 44.9713433 0.0003178153 7.572187e-01 9.137831e-01 14 96542774 96542893 120 + 1.663 1.661 -0.006
ENSG00000090060 E042 45.6458389 0.0042355497 2.341023e-01 5.595981e-01 14 96544149 96544258 110 + 1.691 1.643 -0.164
ENSG00000090060 E043 0.1141751 0.0112060298 6.362652e-01   14 96547688 96547796 109 + 0.087 0.000 -12.175
ENSG00000090060 E044 41.3898554 0.0003870806 3.343846e-02 1.964274e-01 14 96547797 96547895 99 + 1.667 1.580 -0.297
ENSG00000090060 E045 18.8904904 0.0011476558 1.805570e-01 4.931483e-01 14 96547896 96547918 23 + 1.335 1.256 -0.277
ENSG00000090060 E046 39.2130127 0.0003528790 4.066535e-02 2.208451e-01 14 96552480 96552622 143 + 1.644 1.558 -0.293
ENSG00000090060 E047 3.5303250 0.0743094213 9.269535e-01 9.796196e-01 14 96552623 96553532 910 + 0.658 0.654 -0.015
ENSG00000090060 E048 11.1058753 0.0013062115 9.441818e-01 9.860000e-01 14 96555847 96555849 3 + 1.074 1.092 0.062
ENSG00000090060 E049 34.5255895 0.0005412964 4.051167e-01 7.150488e-01 14 96555850 96555947 98 + 1.565 1.534 -0.104
ENSG00000090060 E050 0.0000000       14 96555948 96555950 3 +      
ENSG00000090060 E051 75.6745141 0.0017008395 1.536964e-01 4.539335e-01 14 96556175 96556413 239 + 1.904 1.863 -0.140
ENSG00000090060 E052 0.9195145 0.0121640154 2.293389e-03 3.356681e-02 14 96560438 96560648 211 + 0.000 0.461 14.472
ENSG00000090060 E053 38.7987190 0.0004302955 9.651183e-01 9.922240e-01 14 96560649 96560711 63 + 1.593 1.607 0.048
ENSG00000090060 E054 1.5364797 0.0228414560 1.010914e-01 3.663925e-01 14 96562458 96562818 361 + 0.508 0.258 -1.452
ENSG00000090060 E055 45.4860780 0.0003798403 9.356324e-01 9.822751e-01 14 96562819 96562893 75 + 1.663 1.672 0.029
ENSG00000090060 E056 700.1934853 0.0009276406 3.285683e-09 3.103626e-07 14 96564955 96567116 2162 + 2.802 2.887 0.284

Help

Please Click HERE to learn more details about the results from DEXseq.