ENSG00000090905

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000315183 ENSG00000090905 No_inf pgwt_inf TNRC6A protein_coding protein_coding 11.38833 15.58499 9.874597 0.7356735 0.6002701 -0.6578285 0.6614709 0.0000000 1.9844127 0.0000000 0.6294045 7.6398201 0.06434167 0.000000 0.193025 0.193025 0.002587827 0.002587827 FALSE TRUE
ENST00000450465 ENSG00000090905 No_inf pgwt_inf TNRC6A protein_coding protein_coding 11.38833 15.58499 9.874597 0.7356735 0.6002701 -0.6578285 2.1784924 2.7746866 1.6168608 1.0626416 0.6039354 -0.7754241 0.19905000 0.187675 0.157200 -0.030475 1.000000000 0.002587827 FALSE TRUE
MSTRG.10867.10 ENSG00000090905 No_inf pgwt_inf TNRC6A protein_coding   11.38833 15.58499 9.874597 0.7356735 0.6002701 -0.6578285 0.2946610 0.1239386 0.5816105 0.1239386 0.5816105 2.1430755 0.03154167 0.008150 0.065250 0.057100 1.000000000 0.002587827 FALSE TRUE
MSTRG.10867.18 ENSG00000090905 No_inf pgwt_inf TNRC6A protein_coding   11.38833 15.58499 9.874597 0.7356735 0.6002701 -0.6578285 2.8751264 4.7660778 1.4773066 1.4475475 0.5150211 -1.6831243 0.23813333 0.296775 0.150425 -0.146350 0.992847247 0.002587827 FALSE TRUE
MSTRG.10867.3 ENSG00000090905 No_inf pgwt_inf TNRC6A protein_coding   11.38833 15.58499 9.874597 0.7356735 0.6002701 -0.6578285 3.2113348 4.2289447 1.7755262 0.2365966 0.6870157 -1.2473558 0.29445833 0.271775 0.193050 -0.078725 0.992847247 0.002587827 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000090905 E001 0.0000000       16 24610209 24610484 276 +      
ENSG00000090905 E002 0.0000000       16 24640884 24641009 126 +      
ENSG00000090905 E003 0.0000000       16 24729651 24729668 18 +      
ENSG00000090905 E004 0.5081347 0.0254309822 0.5340232299   16 24729669 24729694 26 + 0.112 0.206 1.042
ENSG00000090905 E005 0.7539716 0.1939214799 0.7424175133 0.907213261 16 24729695 24729712 18 + 0.202 0.258 0.457
ENSG00000090905 E006 3.3577309 0.0768543228 0.9412802246 0.984950795 16 24729713 24729846 134 + 0.629 0.628 -0.003
ENSG00000090905 E007 2.2089785 0.0065027715 0.4351410022 0.737332671 16 24730253 24730300 48 + 0.563 0.451 -0.543
ENSG00000090905 E008 5.3730076 0.0161535045 0.6528790285 0.864307634 16 24750726 24750813 88 + 0.758 0.811 0.212
ENSG00000090905 E009 3.8999452 0.0039551612 0.3332631465 0.656695789 16 24758339 24758360 22 + 0.597 0.721 0.527
ENSG00000090905 E010 10.8071690 0.0103279790 0.9061559897 0.972238474 16 24776933 24777247 315 + 1.066 1.055 -0.041
ENSG00000090905 E011 4.6199310 0.0218657630 0.7452152456 0.908618569 16 24777248 24777358 111 + 0.711 0.753 0.173
ENSG00000090905 E012 0.1315150 0.0123218969 0.7890199840   16 24778344 24778468 125 + 0.000 0.080 11.503
ENSG00000090905 E013 49.0578662 0.0019522544 0.0017985457 0.028065137 16 24789232 24791486 2255 + 1.766 1.629 -0.464
ENSG00000090905 E014 4.9799515 0.0099426865 0.9289502853 0.980168843 16 24791487 24791689 203 + 0.758 0.768 0.042
ENSG00000090905 E015 4.0119408 0.0036670117 0.4618752020 0.755553294 16 24791690 24791817 128 + 0.629 0.721 0.389
ENSG00000090905 E016 0.4907918 0.0162889671 0.7101471420   16 24793350 24793472 123 + 0.202 0.148 -0.543
ENSG00000090905 E017 2.0253423 0.0069496992 0.0139936404 0.115603236 16 24793473 24793649 177 + 0.658 0.304 -1.806
ENSG00000090905 E018 8.2000476 0.0068875542 0.9791344032 0.997323022 16 24794544 24794719 176 + 0.953 0.950 -0.013
ENSG00000090905 E019 0.4908428 0.0765638157 0.7178757890   16 24795644 24795906 263 + 0.202 0.148 -0.544
ENSG00000090905 E020 3.5678623 0.0107048450 0.4287490197 0.732463489 16 24795907 24795939 33 + 0.711 0.607 -0.444
ENSG00000090905 E021 1.5414454 0.0090692715 0.0742893079 0.309602936 16 24795940 24796368 429 + 0.202 0.481 1.778
ENSG00000090905 E022 0.2448134 0.0162040046 0.7716603896   16 24797486 24797489 4 + 0.112 0.080 -0.543
ENSG00000090905 E023 6.9726643 0.0404101249 0.8831688296 0.963497843 16 24797490 24797570 81 + 0.875 0.897 0.084
ENSG00000090905 E024 5.3087837 0.0028593940 0.1025959143 0.368947751 16 24797915 24797966 52 + 0.658 0.850 0.778
ENSG00000090905 E025 0.1308632 0.0122579938 0.7890650647   16 24797967 24798127 161 + 0.000 0.080 11.503
ENSG00000090905 E026 0.2456120 0.0162102790 0.7717224256   16 24803922 24804176 255 + 0.112 0.080 -0.543
ENSG00000090905 E027 11.2843361 0.0209833378 0.3058844416 0.632682315 16 24804177 24804319 143 + 1.007 1.113 0.385
ENSG00000090905 E028 0.2279004 0.2183054290 0.1775755135   16 24804334 24804699 366 + 0.202 0.000 -13.517
ENSG00000090905 E029 0.0000000       16 24804700 24804704 5 +      
ENSG00000090905 E030 0.0000000       16 24804705 24804851 147 +      
ENSG00000090905 E031 0.0000000       16 24804852 24805013 162 +      
ENSG00000090905 E032 9.9767269 0.0120924326 0.3005407376 0.627916420 16 24805014 24805151 138 + 1.087 0.988 -0.365
ENSG00000090905 E033 0.2623781 0.0161307293 0.4001150638   16 24805152 24805604 453 + 0.000 0.148 12.432
ENSG00000090905 E034 5.1573966 0.0509675010 0.3528438906 0.672970832 16 24805605 24805673 69 + 0.858 0.721 -0.544
ENSG00000090905 E035 4.7640693 0.0444685640 0.1859636480 0.499826146 16 24805674 24805733 60 + 0.858 0.668 -0.766
ENSG00000090905 E036 4.9098384 0.0031960794 0.2440569207 0.570232457 16 24806206 24806283 78 + 0.840 0.704 -0.543
ENSG00000090905 E037 6.9995425 0.0035434222 0.2098620696 0.530939539 16 24806574 24806668 95 + 0.967 0.838 -0.493
ENSG00000090905 E038 5.4839751 0.0026466557 0.7740268897 0.921403553 16 24806669 24806718 50 + 0.780 0.811 0.124
ENSG00000090905 E039 4.9782779 0.0032149642 0.9203333960 0.977048751 16 24806719 24806784 66 + 0.758 0.768 0.042
ENSG00000090905 E040 6.7151863 0.0024657426 0.9954024505 1.000000000 16 24809350 24809481 132 + 0.875 0.874 -0.003
ENSG00000090905 E041 0.1315150 0.0123218969 0.7890199840   16 24809482 24809509 28 + 0.000 0.080 11.503
ENSG00000090905 E042 4.1094830 0.0035372612 0.8728898075 0.960150629 16 24815147 24815179 33 + 0.685 0.704 0.078
ENSG00000090905 E043 8.5617151 0.0054860607 0.8407482650 0.947358686 16 24815180 24815305 126 + 0.981 0.960 -0.079
ENSG00000090905 E044 0.1316618 0.0123062305 0.7890534425   16 24815306 24815354 49 + 0.000 0.080 11.503
ENSG00000090905 E045 0.7551235 0.0293819252 0.7133542747 0.893687280 16 24815355 24815475 121 + 0.202 0.258 0.457
ENSG00000090905 E046 0.5241045 0.1767039926 0.1414707546   16 24815476 24816347 872 + 0.000 0.258 13.076
ENSG00000090905 E047 0.8694960 0.1623816213 0.8996913395 0.970130048 16 24816585 24816815 231 + 0.276 0.258 -0.128
ENSG00000090905 E048 10.6580519 0.0020376937 0.6746768331 0.874319515 16 24816816 24816956 141 + 1.077 1.039 -0.138
ENSG00000090905 E049 9.8341084 0.0016665275 0.1516768621 0.450683942 16 24818593 24818678 86 + 1.098 0.969 -0.471
ENSG00000090905 E050 4.4699165 0.0033692630 0.9130345123 0.974270530 16 24818679 24818700 22 + 0.735 0.721 -0.058
ENSG00000090905 E051 0.2285450 0.0153077688 0.1386566879   16 24820136 24820138 3 + 0.202 0.000 -13.934
ENSG00000090905 E052 15.3534921 0.0029787094 0.5361363127 0.802651704 16 24820139 24820360 222 + 1.229 1.182 -0.169
ENSG00000090905 E053 0.5073361 0.0259340375 0.5342336861   16 24821790 24822076 287 + 0.112 0.206 1.041
ENSG00000090905 E054 7.5625246 0.0801348474 0.8801655236 0.962084067 16 24822077 24822147 71 + 0.939 0.908 -0.115
ENSG00000090905 E055 13.5202848 0.0029847615 0.7626489811 0.915729960 16 24822874 24823013 140 + 1.164 1.139 -0.090
ENSG00000090905 E056 167.8383869 0.0001197436 0.0002115319 0.005357529 16 24823432 24826227 2796 + 2.168 2.238 0.233
ENSG00000090905 E057 0.0000000       16 24827501 24827632 132 +      

Help

Please Click HERE to learn more details about the results from DEXseq.