ENSG00000091409

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000416789 ENSG00000091409 No_inf pgwt_inf ITGA6 protein_coding protein_coding 40.67311 9.442986 64.38783 0.5650642 1.616563 2.76817 5.0829243 2.17460860 8.1582009 1.26731729 5.6407329 1.902644 0.1624667 0.254150 0.130725 -0.123425 0.9932366 0.0115237 FALSE TRUE
ENST00000470259 ENSG00000091409 No_inf pgwt_inf ITGA6 protein_coding retained_intron 40.67311 9.442986 64.38783 0.5650642 1.616563 2.76817 0.7906531 1.56779287 0.4027099 0.64810151 0.4027099 -1.934708 0.0570000 0.156425 0.005925 -0.150500 0.2877208 0.0115237   FALSE
ENST00000684293 ENSG00000091409 No_inf pgwt_inf ITGA6 protein_coding protein_coding 40.67311 9.442986 64.38783 0.5650642 1.616563 2.76817 8.8810384 0.07800723 19.5086791 0.07800723 3.9729102 7.793018 0.1541000 0.009275 0.307375 0.298100 0.0115237 0.0115237 FALSE TRUE
MSTRG.17249.10 ENSG00000091409 No_inf pgwt_inf ITGA6 protein_coding   40.67311 9.442986 64.38783 0.5650642 1.616563 2.76817 14.1782077 1.96055823 23.7657315 1.17549006 6.5575159 3.592813 0.3005417 0.188550 0.364975 0.176425 0.9928472 0.0115237 FALSE TRUE
MSTRG.17249.2 ENSG00000091409 No_inf pgwt_inf ITGA6 protein_coding   40.67311 9.442986 64.38783 0.5650642 1.616563 2.76817 10.0147123 3.44676556 10.9889629 0.35729497 3.8914695 1.669873 0.2869333 0.370650 0.167225 -0.203425 0.9928472 0.0115237 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000091409 E001 0.0000000       2 172427354 172427416 63 +      
ENSG00000091409 E002 0.0000000       2 172427417 172427417 1 +      
ENSG00000091409 E003 0.0000000       2 172427418 172427470 53 +      
ENSG00000091409 E004 2.2818922 6.364382e-03 0.079185285 0.32108387 2 172427586 172427667 82 + 0.434 0.000 -11.562
ENSG00000091409 E005 2.9676079 5.033437e-03 0.034877085 0.20157075 2 172427668 172427788 121 + 0.509 0.000 -13.923
ENSG00000091409 E006 0.0000000       2 172427789 172427970 182 +      
ENSG00000091409 E007 0.0000000       2 172465539 172465663 125 +      
ENSG00000091409 E008 4.5353764 3.612485e-03 0.697617212 0.88514123 2 172467481 172467560 80 + 0.593 0.653 0.262
ENSG00000091409 E009 0.2281253 1.537669e-02 1.000000000   2 172468998 172469124 127 + 0.069 0.000 -10.695
ENSG00000091409 E010 25.2544148 5.507970e-04 0.722149271 0.89782000 2 172469125 172469380 256 + 1.250 1.214 -0.127
ENSG00000091409 E011 18.7784436 7.291158e-04 0.889142577 0.96570280 2 172470974 172471105 132 + 1.128 1.110 -0.065
ENSG00000091409 E012 0.3424952 2.844937e-02 1.000000000   2 172472774 172472890 117 + 0.099 0.000 -11.133
ENSG00000091409 E013 17.8971635 8.256926e-04 0.553804114 0.81309077 2 172474055 172474265 211 + 1.099 1.155 0.199
ENSG00000091409 E014 18.6517608 3.125278e-03 0.718801814 0.89676654 2 172474929 172475122 194 + 1.128 1.086 -0.152
ENSG00000091409 E015 13.3129386 1.032732e-03 0.656507482 0.86585512 2 172475597 172475685 89 + 0.996 0.939 -0.213
ENSG00000091409 E016 18.2430713 2.617277e-03 0.616010448 0.84563447 2 172476395 172476513 119 + 1.108 1.155 0.167
ENSG00000091409 E017 15.5695206 8.999087e-04 0.682069866 0.87826937 2 172479641 172479739 99 + 1.046 1.086 0.145
ENSG00000091409 E018 11.2438502 7.165753e-03 0.873026362 0.96015202 2 172479990 172480051 62 + 0.927 0.903 -0.093
ENSG00000091409 E019 24.4027234 5.645079e-04 0.617104631 0.84604262 2 172484782 172484942 161 + 1.227 1.267 0.140
ENSG00000091409 E020 20.1912796 2.439069e-03 0.968697288 0.99366719 2 172485121 172485264 144 + 1.155 1.155 0.000
ENSG00000091409 E021 19.8473755 1.157241e-03 0.904707775 0.97188283 2 172487023 172487138 116 + 1.147 1.155 0.028
ENSG00000091409 E022 25.5107106 5.715236e-03 0.861229785 0.95535031 2 172487264 172487453 190 + 1.253 1.233 -0.071
ENSG00000091409 E023 13.5235971 9.607969e-03 0.436300005 0.73811739 2 172487547 172487630 84 + 1.007 0.903 -0.392
ENSG00000091409 E024 16.5275018 1.851838e-02 0.007860813 0.07915386 2 172487728 172487807 80 + 1.108 0.716 -1.495
ENSG00000091409 E025 8.0512900 2.801670e-02 0.163444279 0.46784228 2 172487961 172487961 1 + 0.823 0.579 -1.016
ENSG00000091409 E026 11.9500609 3.338748e-03 0.029367235 0.18189115 2 172487962 172488004 43 + 0.977 0.653 -1.280
ENSG00000091409 E027 10.9243580 1.594812e-03 0.055217411 0.26274356 2 172488005 172488038 34 + 0.940 0.653 -1.142
ENSG00000091409 E028 21.6823056 6.688130e-04 0.064975038 0.28772647 2 172488126 172488228 103 + 1.204 1.004 -0.723
ENSG00000091409 E029 28.1681475 5.765656e-04 0.784249214 0.92519131 2 172489485 172489613 129 + 1.294 1.267 -0.096
ENSG00000091409 E030 13.8371575 1.006986e-03 0.540507048 0.80527399 2 172489614 172489658 45 + 0.996 1.060 0.234
ENSG00000091409 E031 0.3433647 3.028085e-02 1.000000000   2 172489659 172489928 270 + 0.099 0.000 -11.120
ENSG00000091409 E032 0.3591300 1.659234e-02 0.217951458   2 172490792 172490928 137 + 0.069 0.230 2.028
ENSG00000091409 E033 0.6217992 1.493782e-02 0.007564384   2 172490929 172491023 95 + 0.069 0.491 3.613
ENSG00000091409 E034 26.2805823 8.564932e-03 0.614655697 0.84486710 2 172491024 172491122 99 + 1.269 1.214 -0.192
ENSG00000091409 E035 20.3365699 9.803697e-03 0.346770739 0.66785196 2 172491221 172491280 60 + 1.170 1.060 -0.396
ENSG00000091409 E036 17.0160868 7.807814e-04 0.602432208 0.83865176 2 172491281 172491331 51 + 1.093 1.033 -0.220
ENSG00000091409 E037 20.6787351 5.364430e-03 0.698331328 0.88567305 2 172491425 172491523 99 + 1.160 1.195 0.125
ENSG00000091409 E038 19.7775681 8.200910e-04 0.371173612 0.68926863 2 172497975 172498100 126 + 1.158 1.060 -0.351
ENSG00000091409 E039 13.1239376 1.078850e-03 0.817950735 0.93751042 2 172501772 172501901 130 + 0.981 1.004 0.084
ENSG00000091409 E040 434.5347046 6.055133e-05 0.001916850 0.02944760 2 172504091 172506459 2369 + 2.452 2.497 0.150

Help

Please Click HERE to learn more details about the results from DEXseq.