ENSG00000099330

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000215061 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 0.8763654 0.0000000 2.0767669 0.0000000 1.2123262 7.7051257 0.06656667 0.000000 0.141500 0.141500 0.583996318 0.004057299 FALSE TRUE
ENST00000594283 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding retained_intron 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.3999249 2.7966555 1.2023055 1.0402030 0.5484965 -1.2110987 0.11215833 0.126400 0.187725 0.061325 1.000000000 0.004057299 TRUE FALSE
ENST00000595573 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.4995760 4.4987279 0.0000000 3.3533127 0.0000000 -8.8165766 0.06186667 0.185600 0.000000 -0.185600 0.992847247 0.004057299   FALSE
ENST00000597836 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.4666393 2.9976562 0.4187881 1.1972763 0.4187881 -2.8103030 0.11448333 0.147850 0.097675 -0.050175 0.916436858 0.004057299 FALSE TRUE
ENST00000598068 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 0.3548901 0.1033816 0.5136306 0.1033816 0.5136306 2.2073632 0.05412500 0.005225 0.108300 0.103075 0.993236612 0.004057299 FALSE TRUE
ENST00000599286 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding nonsense_mediated_decay 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.1070820 1.0412984 1.6380738 1.0412984 1.6380738 0.6486087 0.08109167 0.052725 0.126650 0.073925 0.993236612 0.004057299   FALSE
ENST00000600232 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.0195567 2.0171460 0.0000000 2.0171460 0.0000000 -7.6633062 0.07021667 0.100900 0.000000 -0.100900 1.000000000 0.004057299 FALSE TRUE
ENST00000600826 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 0.8159128 0.0000000 2.4477385 0.0000000 2.4477385 7.9411876 0.04631667 0.000000 0.138950 0.138950 0.992847247 0.004057299   FALSE
ENST00000602236 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding protein_coding_CDS_not_defined 13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.8498593 5.5495778 0.0000000 1.0786559 0.0000000 -9.1188315 0.08855833 0.265675 0.000000 -0.265675 0.004057299 0.004057299 FALSE TRUE
MSTRG.14729.1 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding   13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 0.3516330 0.0000000 0.6047638 0.0000000 0.3492224 5.9419602 0.04171667 0.000000 0.080325 0.080325 0.794912359 0.004057299 FALSE TRUE
MSTRG.14729.10 ENSG00000099330 No_inf pgwt_inf OCEL1 protein_coding   13.63422 21.30466 9.895224 1.525061 3.25134 -1.105584 1.0419703 0.5392286 0.3735806 0.5392286 0.3735806 -0.5178768 0.11400833 0.027500 0.078775 0.051275 1.000000000 0.004057299   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000099330 E001 0.2631768 0.016300894 0.682784038   19 17226213 17226221 9 + 0.000 0.126 10.431
ENSG00000099330 E002 0.3948386 0.025711864 0.379687688   19 17226222 17226224 3 + 0.000 0.177 12.397
ENSG00000099330 E003 0.3948386 0.025711864 0.379687688   19 17226225 17226225 1 + 0.000 0.177 12.397
ENSG00000099330 E004 0.6576493 0.034896357 0.140196944 0.43339584 19 17226226 17226242 17 + 0.000 0.264 13.081
ENSG00000099330 E005 1.5599580 0.011222620 0.056542769 0.26600757 19 17226243 17226252 10 + 0.133 0.454 2.367
ENSG00000099330 E006 3.0318711 0.005159047 0.806768545 0.93388825 19 17226253 17226316 64 + 0.544 0.586 0.188
ENSG00000099330 E007 1.1477867 0.011568972 0.540954102 0.80549102 19 17226317 17226353 37 + 0.234 0.337 0.715
ENSG00000099330 E008 1.5604629 0.009469302 0.056465147 0.26578372 19 17226615 17226692 78 + 0.133 0.454 2.367
ENSG00000099330 E009 4.0133486 0.003938803 0.720915064 0.89738156 19 17226693 17226736 44 + 0.693 0.655 -0.159
ENSG00000099330 E010 1.9984546 0.060525679 0.630087759 0.85198265 19 17226737 17226739 3 + 0.498 0.428 -0.355
ENSG00000099330 E011 3.5070067 0.102986791 0.689374184 0.88149005 19 17226740 17226781 42 + 0.660 0.604 -0.244
ENSG00000099330 E012 4.1601212 0.003813084 0.883214354 0.96349784 19 17226782 17226838 57 + 0.660 0.686 0.109
ENSG00000099330 E013 3.6697125 0.004600058 0.647151742 0.86106315 19 17226839 17226869 31 + 0.587 0.655 0.300
ENSG00000099330 E014 2.4069626 0.018799766 0.635069559 0.85456585 19 17226870 17226974 105 + 0.445 0.525 0.393
ENSG00000099330 E015 1.6542309 0.047654823 0.532027541 0.80022893 19 17226975 17226993 19 + 0.316 0.428 0.645
ENSG00000099330 E016 6.7152154 0.020152146 0.453041412 0.74997670 19 17226994 17227042 49 + 0.778 0.877 0.386
ENSG00000099330 E017 10.3895549 0.015358270 0.416364963 0.72341266 19 17227043 17227157 115 + 0.948 1.044 0.355
ENSG00000099330 E018 5.0836366 0.012973424 0.399137829 0.71113400 19 17227158 17227199 42 + 0.660 0.780 0.493
ENSG00000099330 E019 9.0269346 0.034134254 0.504765624 0.78360510 19 17227840 17228005 166 + 0.997 0.949 -0.181
ENSG00000099330 E020 0.3933882 0.069375379 0.384977975   19 17228254 17228255 2 + 0.000 0.177 12.391
ENSG00000099330 E021 5.8168410 0.002635787 0.632398178 0.85330109 19 17228256 17228309 54 + 0.752 0.815 0.252
ENSG00000099330 E022 1.2797365 0.147691407 0.468776669 0.76027304 19 17228310 17228380 71 + 0.234 0.370 0.908
ENSG00000099330 E023 0.1308632 0.012682465 1.000000000   19 17228381 17228410 30 + 0.000 0.067 10.894
ENSG00000099330 E024 0.1308632 0.012682465 1.000000000   19 17228411 17228430 20 + 0.000 0.067 10.894
ENSG00000099330 E025 2.5230335 0.027026580 0.911389720 0.97375588 19 17228431 17228802 372 + 0.498 0.525 0.130
ENSG00000099330 E026 2.5376993 0.010509558 0.527580244 0.79726508 19 17228803 17228826 24 + 0.445 0.546 0.493
ENSG00000099330 E027 4.9930956 0.003192788 0.410306566 0.71898116 19 17228827 17228915 89 + 0.804 0.715 -0.355
ENSG00000099330 E028 2.9273087 0.005372004 0.021284021 0.14967327 19 17228916 17228945 30 + 0.752 0.454 -1.333
ENSG00000099330 E029 4.1384138 0.003552221 0.002978503 0.04054278 19 17228946 17229008 63 + 0.892 0.546 -1.433
ENSG00000099330 E030 8.8017671 0.036147365 0.135829178 0.42693780 19 17229009 17229219 211 + 1.069 0.896 -0.641

Help

Please Click HERE to learn more details about the results from DEXseq.