ENSG00000101187

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000217159 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding protein_coding 118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 58.732261 2.816810 103.403072 0.5550660 2.2623415 5.1930997 0.39852500 0.175500 0.541775 0.366275 0.15271729 0.03721774 FALSE TRUE
ENST00000451793 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding protein_coding 118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 11.514929 6.821379 10.336071 1.0760182 6.1466176 0.5988343 0.19368333 0.411650 0.052375 -0.359275 0.47051820 0.03721774 FALSE FALSE
ENST00000466818 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding protein_coding_CDS_not_defined 118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 2.597555 1.400678 3.693978 0.4901466 0.7820345 1.3926863 0.04150000 0.086325 0.018925 -0.067400 0.94610199 0.03721774   FALSE
ENST00000497209 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding nonsense_mediated_decay 118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 6.608520 1.170451 11.504930 0.2710817 0.9831148 3.2860954 0.05981667 0.070550 0.059700 -0.010850 1.00000000 0.03721774 TRUE TRUE
ENST00000497919 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding protein_coding_CDS_not_defined 118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 9.966180 0.000000 15.053483 0.0000000 5.7559308 10.5568397 0.05684167 0.000000 0.075750 0.075750 0.69301151 0.03721774 FALSE FALSE
MSTRG.18518.1 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding   118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 12.093223 3.956915 15.432662 0.4501826 1.7002054 1.9608322 0.14601667 0.243650 0.080375 -0.163275 0.37419640 0.03721774 FALSE TRUE
MSTRG.18518.8 ENSG00000101187 No_inf pgwt_inf SLCO4A1 protein_coding   118.495 16.36751 191.7858 0.6387372 7.886942 3.549783 5.510499 0.000000 12.242631 0.0000000 1.8533775 10.2588759 0.03142500 0.000000 0.064425 0.064425 0.03721774 0.03721774 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000101187 E001 0.9475252 1.890343e-01 1.529191e-01 4.525261e-01 20 62642465 62642502 38 + 0.152 0.435 2.044
ENSG00000101187 E002 6.1688077 8.531393e-03 1.567585e-01 4.584444e-01 20 62642503 62642519 17 + 0.624 0.847 0.912
ENSG00000101187 E003 14.1331851 9.506989e-04 3.454254e-01 6.668334e-01 20 62642520 62642553 34 + 0.937 1.054 0.432
ENSG00000101187 E004 0.2279811 1.539054e-02 7.005782e-01   20 62642727 62642782 56 + 0.057 0.000 -7.059
ENSG00000101187 E005 0.8336459 1.276074e-02 8.980593e-02 3.439322e-01 20 62656341 62656358 18 + 0.130 0.435 2.306
ENSG00000101187 E006 238.9966694 6.884891e-05 4.053153e-02 2.203663e-01 20 62656359 62657250 892 + 2.134 2.063 -0.239
ENSG00000101187 E007 56.3607036 4.092362e-03 3.488755e-01 6.695494e-01 20 62658677 62658767 91 + 1.517 1.442 -0.257
ENSG00000101187 E008 0.1138060 1.117458e-02 3.215161e-01   20 62660374 62660411 38 + 0.029 0.000 -6.145
ENSG00000101187 E009 74.9246005 2.275269e-04 8.317426e-01 9.435071e-01 20 62660412 62660533 122 + 1.630 1.644 0.046
ENSG00000101187 E010 48.0149044 3.639455e-04 7.046548e-03 7.375257e-02 20 62661064 62661175 112 + 1.460 1.217 -0.846
ENSG00000101187 E011 0.0000000       20 62664934 62665088 155 +      
ENSG00000101187 E012 0.0000000       20 62666380 62666414 35 +      
ENSG00000101187 E013 0.0000000       20 62666415 62666575 161 +      
ENSG00000101187 E014 1.0436098 1.439194e-01 6.372050e-01 8.557720e-01 20 62667478 62667586 109 + 0.192 0.270 0.628
ENSG00000101187 E015 0.5888325 1.515987e-02 3.010092e-01   20 62667741 62667744 4 + 0.107 0.270 1.628
ENSG00000101187 E016 32.8632440 4.164366e-04 4.126841e-02 2.226478e-01 20 62667745 62667812 68 + 1.301 1.086 -0.764
ENSG00000101187 E017 61.5246911 2.184317e-04 2.127156e-02 1.496253e-01 20 62667813 62667869 57 + 1.561 1.385 -0.606
ENSG00000101187 E018 56.6757991 2.841065e-04 2.211365e-01 5.448208e-01 20 62667870 62667910 41 + 1.521 1.429 -0.317
ENSG00000101187 E019 7.4249092 3.120194e-03 3.264101e-01 6.508340e-01 20 62667911 62668011 101 + 0.696 0.847 0.603
ENSG00000101187 E020 112.0276237 1.459246e-04 3.801821e-03 4.797458e-02 20 62668012 62668154 143 + 1.815 1.652 -0.550
ENSG00000101187 E021 42.0145402 3.360541e-04 1.869880e-01 5.011331e-01 20 62668155 62668157 3 + 1.397 1.281 -0.406
ENSG00000101187 E022 53.7926709 2.685700e-04 2.746661e-01 6.026670e-01 20 62668158 62668184 27 + 1.498 1.414 -0.289
ENSG00000101187 E023 10.7544514 7.129128e-03 6.890539e-01 8.813191e-01 20 62668185 62668418 234 + 0.840 0.897 0.219
ENSG00000101187 E024 4.1775955 3.298015e-03 4.397704e-01 7.405067e-01 20 62668419 62668476 58 + 0.509 0.648 0.628
ENSG00000101187 E025 42.2628407 1.333940e-03 7.558660e-01 9.131768e-01 20 62668477 62668479 3 + 1.389 1.414 0.090
ENSG00000101187 E026 73.7778893 1.068083e-03 4.515536e-01 7.488077e-01 20 62668480 62668541 62 + 1.629 1.580 -0.167
ENSG00000101187 E027 144.6210154 1.168879e-04 9.267845e-01 9.795385e-01 20 62668930 62669078 149 + 1.913 1.909 -0.013
ENSG00000101187 E028 19.8105892 8.961870e-04 2.431606e-01 5.694035e-01 20 62669951 62670053 103 + 1.069 1.194 0.449
ENSG00000101187 E029 13.9829149 9.966180e-04 7.488062e-01 9.098858e-01 20 62670054 62670120 67 + 0.941 0.983 0.156
ENSG00000101187 E030 121.5831204 1.278931e-04 1.204712e-06 6.668755e-05 20 62670121 62671266 1146 + 1.816 2.022 0.692
ENSG00000101187 E031 64.5585276 2.159733e-04 6.155593e-04 1.237787e-02 20 62671267 62671749 483 + 1.547 1.749 0.686
ENSG00000101187 E032 282.9511818 8.723366e-05 1.663754e-01 4.724242e-01 20 62671750 62672455 706 + 2.198 2.239 0.137
ENSG00000101187 E033 3.7066406 1.019044e-02 6.974534e-01 8.850671e-01 20 62672456 62672613 158 + 0.480 0.554 0.355
ENSG00000101187 E034 2.9729864 5.015398e-03 2.229117e-03 3.290489e-02 20 62685441 62685785 345 + 0.353 0.847 2.266

Help

Please Click HERE to learn more details about the results from DEXseq.