ENSG00000102910

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000285737 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding protein_coding 14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 1.098866 1.07172308 1.690314 0.24017801 0.7090208 0.6524698 0.08213333 0.116325 0.088000 -0.028325 0.99284725 0.03836282 FALSE TRUE
ENST00000416006 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding nonsense_mediated_decay 14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 1.719960 0.08313419 3.397589 0.08313419 0.4459343 5.1932965 0.10657500 0.008300 0.197400 0.189100 0.03836282 0.03836282 TRUE TRUE
ENST00000535754 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding protein_coding 14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 3.338780 3.30258572 2.622239 1.15483069 1.5253461 -0.3316671 0.24741667 0.339225 0.150100 -0.189125 0.99284725 0.03836282 FALSE TRUE
ENST00000564259 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding protein_coding_CDS_not_defined 14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 1.701056 0.00000000 3.751832 0.00000000 1.4564125 8.5552915 0.08635000 0.000000 0.198525 0.198525 0.32978039 0.03836282 FALSE TRUE
ENST00000566755 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding nonsense_mediated_decay 14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 3.134615 1.00261846 3.893496 1.00261846 1.7031231 1.9466760 0.21983333 0.112925 0.224800 0.111875 0.96374952 0.03836282 FALSE TRUE
MSTRG.11126.1 ENSG00000102910 No_inf pgwt_inf LONP2 protein_coding   14.23759 9.475748 17.61995 0.3981944 1.452621 0.8941953 2.366295 3.77846456 1.453824 0.31740443 0.8511682 -1.3718709 0.20850000 0.400225 0.095575 -0.304650 0.61816404 0.03836282 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000102910 E001 0.0000000       16 48244300 48244332 33 +      
ENSG00000102910 E002 0.0000000       16 48244333 48244354 22 +      
ENSG00000102910 E003 0.0000000       16 48244355 48244387 33 +      
ENSG00000102910 E004 0.8326596 0.0143550028 3.416046e-01 6.634385e-01 16 48244388 48244621 234 + 0.330 0.184 -1.114
ENSG00000102910 E005 11.8801890 0.0012500040 1.562782e-02 1.236014e-01 16 48252131 48252365 235 + 1.199 0.998 -0.727
ENSG00000102910 E006 9.6386622 0.0287269447 2.085749e-01 5.292484e-01 16 48256610 48256741 132 + 1.093 0.949 -0.529
ENSG00000102910 E007 10.8465897 0.0013959671 1.204565e-03 2.066092e-02 16 48258618 48258740 123 + 1.193 0.909 -1.037
ENSG00000102910 E008 12.7054924 0.0011480177 1.909843e-01 5.057915e-01 16 48261424 48261587 164 + 1.186 1.081 -0.377
ENSG00000102910 E009 0.0000000       16 48262776 48262777 2 +      
ENSG00000102910 E010 9.6490148 0.0015589808 9.293121e-01 9.803127e-01 16 48262778 48262872 95 + 1.024 1.031 0.025
ENSG00000102910 E011 19.6766696 0.0009818432 4.689307e-02 2.386507e-01 16 48270016 48270274 259 + 1.376 1.245 -0.458
ENSG00000102910 E012 13.5318306 0.0010945610 1.323313e-01 4.216875e-01 16 48277338 48277479 142 + 1.217 1.100 -0.420
ENSG00000102910 E013 9.3341564 0.0014799315 4.004554e-01 7.118939e-01 16 48296015 48296084 70 + 1.051 0.974 -0.284
ENSG00000102910 E014 10.7233449 0.0013057006 7.820896e-02 3.190594e-01 16 48296085 48296165 81 + 1.139 0.986 -0.555
ENSG00000102910 E015 11.2297451 0.0015017597 2.305992e-03 3.365847e-02 16 48299662 48299788 127 + 1.199 0.936 -0.956
ENSG00000102910 E016 14.7362489 0.0013661562 7.084789e-01 8.914086e-01 16 48303172 48303305 134 + 1.211 1.182 -0.103
ENSG00000102910 E017 13.9345566 0.0011216916 2.385328e-01 5.641933e-01 16 48334216 48334311 96 + 1.217 1.126 -0.325
ENSG00000102910 E018 9.2857850 0.0015311744 1.258222e-01 4.112422e-01 16 48334312 48334358 47 + 1.077 0.936 -0.519
ENSG00000102910 E019 0.3759623 0.0166387340 4.966419e-01   16 48336393 48336498 106 + 0.089 0.184 1.208
ENSG00000102910 E020 24.9164938 0.0005819154 5.540533e-02 2.631047e-01 16 48347507 48347714 208 + 1.466 1.354 -0.389
ENSG00000102910 E021 0.1311489 0.0122278759 4.642634e-01   16 48348096 48348099 4 + 0.000 0.101 8.348
ENSG00000102910 E022 19.9866288 0.0069570969 1.832469e-01 4.962427e-01 16 48348100 48348290 191 + 1.368 1.270 -0.340
ENSG00000102910 E023 17.3365836 0.0162996464 3.140219e-01 6.399297e-01 16 48351581 48351685 105 + 1.304 1.218 -0.302
ENSG00000102910 E024 19.6176641 0.0007368217 4.370244e-01 7.387063e-01 16 48351686 48351798 113 + 1.289 1.338 0.172
ENSG00000102910 E025 184.1624145 0.0001144368 3.549969e-09 3.334975e-07 16 48351799 48355685 3887 + 2.214 2.315 0.339
ENSG00000102910 E026 16.5226526 0.0009531132 2.867869e-05 1.043480e-03 16 48355686 48356448 763 + 1.068 1.369 1.063
ENSG00000102910 E027 4.0456666 0.0159589320 5.596440e-03 6.265133e-02 16 48356449 48356664 216 + 0.484 0.848 1.562
ENSG00000102910 E028 1.9006416 0.0123297537 3.740040e-02 2.102327e-01 16 48356665 48356710 46 + 0.281 0.590 1.668
ENSG00000102910 E029 2.4906188 0.0142822201 2.346647e-01 5.598043e-01 16 48356711 48357349 639 + 0.451 0.619 0.793
ENSG00000102910 E030 0.0000000       16 48361477 48361704 228 +      
ENSG00000102910 E031 0.0000000       16 48361705 48361759 55 +      
ENSG00000102910 E032 0.0000000       16 48361760 48361853 94 +      
ENSG00000102910 E033 0.0000000       16 48361854 48363122 1269 +      

Help

Please Click HERE to learn more details about the results from DEXseq.