ENSG00000104679

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265806 ENSG00000104679 No_inf pgwt_inf R3HCC1 protein_coding protein_coding 29.06486 27.03894 33.3389 0.4868031 3.509404 0.302067 5.924445 16.497895 0.000000 2.032500 0.0000000 -10.6889404 0.2182167 0.61065 0.000000 -0.610650 9.892172e-09 9.892172e-09 FALSE TRUE
ENST00000411463 ENSG00000104679 No_inf pgwt_inf R3HCC1 protein_coding protein_coding 29.06486 27.03894 33.3389 0.4868031 3.509404 0.302067 16.748630 4.572886 24.399791 2.178118 0.7042021 2.4131318 0.5731417 0.16920 0.748725 0.579525 2.725957e-01 9.892172e-09 FALSE TRUE
ENST00000517633 ENSG00000104679 No_inf pgwt_inf R3HCC1 protein_coding protein_coding 29.06486 27.03894 33.3389 0.4868031 3.509404 0.302067 1.038015 0.000000 3.114044 0.000000 3.1140437 8.2872708 0.0237500 0.00000 0.071250 0.071250 9.928472e-01 9.892172e-09   FALSE
ENST00000520480 ENSG00000104679 No_inf pgwt_inf R3HCC1 protein_coding protein_coding 29.06486 27.03894 33.3389 0.4868031 3.509404 0.302067 4.407830 5.968162 5.050549 1.053201 0.4529944 -0.2404081 0.1510583 0.22015 0.154850 -0.065300 9.928472e-01 9.892172e-09 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000104679 E001 0.0000000       8 23270120 23270243 124 +      
ENSG00000104679 E002 0.1308632 0.0122174700 0.459009776   8 23287908 23287928 21 + 0.000 0.102 11.530
ENSG00000104679 E003 0.1308632 0.0122174700 0.459009776   8 23287929 23287967 39 + 0.000 0.102 11.532
ENSG00000104679 E004 0.0000000       8 23287968 23288094 127 +      
ENSG00000104679 E005 0.1311489 0.0123195203 0.458835152   8 23288095 23288107 13 + 0.000 0.102 11.532
ENSG00000104679 E006 2.5337750 0.0072683313 0.468343045 0.75990232 8 23288108 23288123 16 + 0.596 0.494 -0.474
ENSG00000104679 E007 6.4826141 0.0053388906 0.876526467 0.96091368 8 23288124 23288157 34 + 0.866 0.882 0.063
ENSG00000104679 E008 0.0000000       8 23288184 23288275 92 +      
ENSG00000104679 E009 0.1311489 0.0123195203 0.458835152   8 23288422 23288505 84 + 0.000 0.102 11.532
ENSG00000104679 E010 17.9516451 0.0012615363 0.022682737 0.15625053 8 23288506 23288633 128 + 1.348 1.192 -0.546
ENSG00000104679 E011 9.7694917 0.0204679793 0.007349762 0.07592322 8 23289016 23289042 27 + 1.150 0.867 -1.046
ENSG00000104679 E012 19.3506835 0.0007730512 0.598082204 0.83675395 8 23289043 23289153 111 + 1.325 1.291 -0.120
ENSG00000104679 E013 14.7541649 0.0011112877 0.893754889 0.96786776 8 23289866 23289925 60 + 1.202 1.192 -0.036
ENSG00000104679 E014 21.1725810 0.0016983381 0.105485134 0.37493135 8 23289926 23290051 126 + 1.394 1.291 -0.358
ENSG00000104679 E015 23.9183725 0.0008503245 0.037454563 0.21042202 8 23290052 23290219 168 + 1.453 1.330 -0.425
ENSG00000104679 E016 17.7331315 0.0007926343 0.707448659 0.89096777 8 23290220 23290334 115 + 1.260 1.285 0.087
ENSG00000104679 E017 17.5499212 0.0009299120 0.821524624 0.93919363 8 23290335 23290412 78 + 1.276 1.260 -0.055
ENSG00000104679 E018 18.2536156 0.0007536241 0.605587172 0.84021118 8 23290413 23290469 57 + 1.301 1.267 -0.121
ENSG00000104679 E019 0.5693183 0.1725602164 0.052652819   8 23290976 23291360 385 + 0.329 0.000 -13.602
ENSG00000104679 E020 35.5780871 0.0005009380 0.625474621 0.85014071 8 23291361 23291533 173 + 1.552 1.575 0.078
ENSG00000104679 E021 24.3491676 0.0019337004 0.009191155 0.08796136 8 23293303 23293373 71 + 1.320 1.475 0.535
ENSG00000104679 E022 27.4252038 0.0070523127 0.138838843 0.43158532 8 23294769 23294864 96 + 1.406 1.498 0.317
ENSG00000104679 E023 3.3557314 0.0043983419 0.173619632 0.48313528 8 23295459 23295630 172 + 0.543 0.719 0.767
ENSG00000104679 E024 43.9427154 0.0003750096 0.014964916 0.12034958 8 23295967 23296279 313 + 1.599 1.701 0.348

Help

Please Click HERE to learn more details about the results from DEXseq.