ENSG00000104915

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000242770 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding protein_coding 65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 4.467495 4.039859 2.796568 2.4133369 1.6322578 -0.5290649 0.06603333 0.060325 0.055150 -0.005175 9.928472e-01 3.403304e-10 FALSE TRUE
ENST00000587230 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding protein_coding 65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 9.125666 0.000000 22.622958 0.0000000 1.7512934 11.1442094 0.16684167 0.000000 0.421675 0.421675 3.403304e-10 3.403304e-10 FALSE TRUE
ENST00000589083 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding protein_coding 65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 10.270916 15.830477 6.024617 1.9358638 0.9430462 -1.3922817 0.15697500 0.237750 0.111725 -0.126025 8.474536e-01 3.403304e-10 FALSE TRUE
ENST00000593126 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding protein_coding 65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 12.455459 10.672241 6.832879 4.0506344 4.2401804 -0.6425391 0.17730833 0.155050 0.124775 -0.030275 9.928472e-01 3.403304e-10 FALSE TRUE
MSTRG.14629.10 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding   65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 8.814588 12.188462 7.351874 7.0372185 2.4541309 -0.7285543 0.13611667 0.189925 0.133900 -0.056025 9.928472e-01 3.403304e-10 FALSE TRUE
MSTRG.14629.8 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding   65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 9.856328 12.220603 0.000000 4.5318478 0.0000000 -10.2562798 0.13416667 0.188350 0.000000 -0.188350 1.999090e-01 3.403304e-10   TRUE
MSTRG.14629.9 ENSG00000104915 No_inf pgwt_inf STX10 protein_coding   65.41016 66.55642 53.7254 3.588965 1.924329 -0.3089218 3.605015 5.689021 3.908608 0.9372341 1.4043015 -0.5403729 0.06059167 0.086275 0.075300 -0.010975 9.928472e-01 3.403304e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000104915 E001 0.1139502 0.0111885263 0.496229950   19 13144058 13144061 4 - 0.099 0.000 -11.068
ENSG00000104915 E002 0.1139502 0.0111885263 0.496229950   19 13144062 13144070 9 - 0.099 0.000 -11.068
ENSG00000104915 E003 0.2456120 0.0163350088 0.949671161   19 13144071 13144072 2 - 0.099 0.092 -0.116
ENSG00000104915 E004 12.3056062 0.0010951103 0.996152650 1.00000000 19 13144073 13144139 67 - 1.122 1.122 0.000
ENSG00000104915 E005 31.3584425 0.0004601806 0.456635048 0.75247333 19 13144140 13144270 131 - 1.485 1.524 0.135
ENSG00000104915 E006 49.1484537 0.0003049503 0.804315838 0.93302026 19 13144271 13144403 133 - 1.692 1.702 0.036
ENSG00000104915 E007 51.8467870 0.0003702081 0.843560569 0.94827108 19 13144404 13144486 83 - 1.716 1.724 0.028
ENSG00000104915 E008 3.1778495 0.0048381871 0.014699972 0.11895773 19 13144487 13144488 2 - 0.403 0.738 1.547
ENSG00000104915 E009 7.2084820 0.0019328747 0.002328951 0.03392508 19 13144489 13144576 88 - 0.706 1.027 1.242
ENSG00000104915 E010 26.7231405 0.0007516736 0.881009134 0.96237652 19 13144577 13144600 24 - 1.435 1.444 0.031
ENSG00000104915 E011 26.2474021 0.0026323799 0.773532886 0.92112532 19 13144601 13144614 14 - 1.423 1.441 0.061
ENSG00000104915 E012 38.4725062 0.0003702062 0.589459881 0.83221087 19 13144615 13144671 57 - 1.579 1.605 0.088
ENSG00000104915 E013 28.6563517 0.0005065815 0.403097036 0.71353149 19 13144764 13144767 4 - 1.443 1.490 0.159
ENSG00000104915 E014 51.3885640 0.0004281128 0.245167857 0.57163479 19 13144768 13144870 103 - 1.689 1.737 0.163
ENSG00000104915 E015 20.6413315 0.0006764936 0.426359914 0.73068409 19 13145288 13145302 15 - 1.303 1.355 0.179
ENSG00000104915 E016 44.7840234 0.0003525462 0.509522004 0.78616876 19 13145303 13145385 83 - 1.642 1.671 0.099
ENSG00000104915 E017 28.1231179 0.0005654908 0.156712052 0.45835901 19 13145386 13145395 10 - 1.503 1.425 -0.266
ENSG00000104915 E018 0.3592742 0.0167065019 0.534321410   19 13145396 13145414 19 - 0.179 0.092 -1.116
ENSG00000104915 E019 0.9189431 0.0163993432 0.006142628 0.06705481 19 13145531 13145579 49 - 0.000 0.423 13.442
ENSG00000104915 E020 53.3322207 0.0002788249 0.062940979 0.28272845 19 13149029 13149091 63 - 1.772 1.698 -0.248
ENSG00000104915 E021 52.2856872 0.0002666451 0.130662947 0.41934425 19 13149499 13149572 74 - 1.756 1.696 -0.204
ENSG00000104915 E022 29.4628997 0.0004384867 0.137880246 0.43009499 19 13149573 13149593 21 - 1.523 1.444 -0.272
ENSG00000104915 E023 0.7710866 0.0140189575 0.113315699 0.38925273 19 13149594 13149604 11 - 0.099 0.338 2.206
ENSG00000104915 E024 0.7712334 0.1262675008 0.150181446 0.44835530 19 13149605 13149712 108 - 0.099 0.338 2.207
ENSG00000104915 E025 0.3772738 0.2024441490 0.681645064   19 13149713 13149727 15 - 0.099 0.167 0.885
ENSG00000104915 E026 57.0670223 0.0042053713 0.180574582 0.49315682 19 13149728 13149897 170 - 1.794 1.734 -0.202
ENSG00000104915 E027 7.9133818 0.0018444832 0.019590860 0.14219311 19 13149898 13149963 66 - 0.803 1.037 0.884
ENSG00000104915 E028 7.4657094 0.0137351872 0.254503297 0.58141606 19 13149964 13150138 175 - 0.852 0.976 0.469
ENSG00000104915 E029 12.2111607 0.0011647794 0.012713468 0.10845366 19 13150139 13150296 158 - 1.219 1.017 -0.725
ENSG00000104915 E030 0.1308632 0.0122955071 0.583015821   19 13150297 13150383 87 - 0.000 0.092 10.635

Help

Please Click HERE to learn more details about the results from DEXseq.