ENSG00000110880

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261401 ENSG00000110880 No_inf pgwt_inf CORO1C protein_coding protein_coding 124.0002 53.63602 163.3069 1.302813 5.191199 1.606131 106.99337 49.95043 134.29243 0.5686693 1.276378 1.426628 0.879825 0.932325 0.824775 -0.107550 7.819849e-01 7.475129e-05 FALSE TRUE
ENST00000549384 ENSG00000110880 No_inf pgwt_inf CORO1C protein_coding protein_coding_CDS_not_defined 124.0002 53.63602 163.3069 1.302813 5.191199 1.606131 8.63295 0.00000 20.63245 0.0000000 4.596104 11.011399 0.052750 0.000000 0.123925 0.123925 7.475129e-05 7.475129e-05   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000110880 E001 1.5867324 8.608567e-03 1.327145e-01 4.221943e-01 12 108645109 108645114 6 - 0.306 0.539 1.262
ENSG00000110880 E002 775.0728814 1.762872e-04 8.515012e-17 2.142313e-14 12 108645115 108646566 1452 - 2.820 2.911 0.304
ENSG00000110880 E003 28.8212833 5.323989e-03 3.145556e-01 6.405746e-01 12 108646567 108646568 2 - 1.453 1.386 -0.230
ENSG00000110880 E004 64.3572718 2.424012e-04 5.839744e-02 2.711999e-01 12 108646569 108646645 77 - 1.796 1.718 -0.265
ENSG00000110880 E005 222.2712721 9.935107e-05 6.267860e-02 2.819793e-01 12 108646646 108646988 343 - 2.294 2.338 0.144
ENSG00000110880 E006 243.0639190 9.162975e-05 7.012586e-01 8.876226e-01 12 108646989 108647379 391 - 2.343 2.354 0.036
ENSG00000110880 E007 30.1658742 6.960984e-04 9.103089e-01 9.734325e-01 12 108647380 108647383 4 - 1.451 1.460 0.032
ENSG00000110880 E008 37.3459715 9.580446e-03 6.781217e-01 8.760103e-01 12 108647384 108647400 17 - 1.534 1.564 0.100
ENSG00000110880 E009 35.6312239 1.248040e-02 9.243346e-01 9.785164e-01 12 108647401 108647402 2 - 1.521 1.528 0.024
ENSG00000110880 E010 99.9940652 2.479599e-04 1.675409e-01 4.741485e-01 12 108647403 108647522 120 - 1.976 1.931 -0.149
ENSG00000110880 E011 95.9196649 1.694542e-04 6.862255e-01 8.803469e-01 12 108648605 108648686 82 - 1.949 1.937 -0.038
ENSG00000110880 E012 132.7446656 1.139381e-04 4.767864e-01 7.655622e-01 12 108648687 108648850 164 - 2.090 2.072 -0.060
ENSG00000110880 E013 39.0746776 3.302621e-04 5.060095e-01 7.844104e-01 12 108648963 108648966 4 - 1.572 1.539 -0.113
ENSG00000110880 E014 59.5140733 2.474209e-04 1.121276e-02 1.002426e-01 12 108648967 108649020 54 - 1.771 1.659 -0.377
ENSG00000110880 E015 10.8553892 1.304609e-03 2.029223e-02 1.453961e-01 12 108649021 108649671 651 - 0.964 1.174 0.764
ENSG00000110880 E016 2.5962348 1.208523e-02 6.939749e-01 8.838947e-01 12 108652045 108652271 227 - 0.543 0.484 -0.282
ENSG00000110880 E017 95.0425196 1.535392e-04 7.700782e-02 3.159714e-01 12 108652272 108652417 146 - 1.958 1.899 -0.198
ENSG00000110880 E018 0.3589885 1.671095e-02 7.561353e-01   12 108653038 108653060 23 - 0.112 0.149 0.484
ENSG00000110880 E019 65.2541528 2.156148e-04 4.798468e-03 5.650287e-02 12 108654306 108654410 105 - 1.812 1.693 -0.402
ENSG00000110880 E020 49.7874201 2.786999e-04 2.470721e-01 5.737563e-01 12 108657304 108657361 58 - 1.680 1.627 -0.180
ENSG00000110880 E021 54.7250224 2.585500e-04 5.092864e-01 7.860491e-01 12 108657362 108657423 62 - 1.713 1.686 -0.093
ENSG00000110880 E022 63.9857132 2.384844e-04 5.655050e-01 8.187647e-01 12 108658738 108658822 85 - 1.778 1.757 -0.073
ENSG00000110880 E023 42.7229937 2.819049e-03 4.721232e-01 7.624213e-01 12 108658823 108658858 36 - 1.611 1.573 -0.128
ENSG00000110880 E024 34.1226734 3.899211e-03 6.999901e-01 8.867192e-01 12 108658859 108658877 19 - 1.512 1.490 -0.074
ENSG00000110880 E025 27.7306618 2.662706e-03 7.871583e-01 9.262759e-01 12 108658878 108658880 3 - 1.423 1.408 -0.052
ENSG00000110880 E026 35.0817891 5.920469e-04 7.615652e-01 9.153843e-01 12 108658881 108658919 39 - 1.521 1.507 -0.049
ENSG00000110880 E027 0.1139502 1.124844e-02 1.000000e+00   12 108662023 108662028 6 - 0.059 0.000 -10.753
ENSG00000110880 E028 48.2658680 4.576854e-04 3.151801e-01 6.411331e-01 12 108662029 108662113 85 - 1.665 1.618 -0.158
ENSG00000110880 E029 39.1662664 3.794538e-04 8.085351e-02 3.249142e-01 12 108662114 108662158 45 - 1.588 1.496 -0.318
ENSG00000110880 E030 69.3957096 2.190583e-04 5.233204e-04 1.089450e-02 12 108678272 108678394 123 - 1.844 1.700 -0.486
ENSG00000110880 E031 0.1138060 1.121281e-02 1.000000e+00   12 108696360 108696402 43 - 0.059 0.000 -10.753
ENSG00000110880 E032 0.1138060 1.121281e-02 1.000000e+00   12 108700940 108701123 184 - 0.059 0.000 -10.753
ENSG00000110880 E033 80.1983016 1.914262e-04 7.666121e-06 3.374492e-04 12 108701124 108701306 183 - 1.913 1.738 -0.591
ENSG00000110880 E034 20.5825512 1.160378e-03 1.877897e-03 2.894600e-02 12 108701307 108701323 17 - 1.353 1.110 -0.858
ENSG00000110880 E035 0.1308632 1.227455e-02 1.683619e-01   12 108701324 108701356 33 - 0.000 0.149 11.693
ENSG00000110880 E036 1.1746517 1.523539e-02 6.384113e-01 8.564747e-01 12 108701489 108701965 477 - 0.337 0.260 -0.516
ENSG00000110880 E037 0.0000000       12 108701966 108701981 16 -      
ENSG00000110880 E038 0.3771270 1.676914e-02 1.459355e-01   12 108702796 108703075 280 - 0.059 0.260 2.484
ENSG00000110880 E039 0.2279811 1.539857e-02 1.000000e+00   12 108730145 108730561 417 - 0.112 0.000 -11.659
ENSG00000110880 E040 0.0000000       12 108730562 108730622 61 -      
ENSG00000110880 E041 0.0000000       12 108730623 108730843 221 -      
ENSG00000110880 E042 0.0000000       12 108731102 108731153 52 -      
ENSG00000110880 E043 23.1369436 5.887700e-04 1.874120e-06 9.840705e-05 12 108731429 108731526 98 - 1.423 1.051 -1.315

Help

Please Click HERE to learn more details about the results from DEXseq.