ENSG00000115207

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000264720 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding protein_coding 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 16.2439038 14.4172318 16.756766 1.0561864 0.6414440 0.2168099 0.44736667 0.345700 0.518925 0.173225 0.992847247 0.002293681 FALSE  
ENST00000415683 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding nonsense_mediated_decay 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 0.8074704 0.3290321 2.093379 0.3290321 1.4806413 2.6332152 0.02528333 0.007550 0.068300 0.060750 0.992847247 0.002293681 TRUE  
ENST00000454704 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding protein_coding 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 1.7734003 2.4611857 0.000000 1.4575477 0.0000000 -7.9490596 0.04087500 0.057550 0.000000 -0.057550 0.983547122 0.002293681 FALSE  
ENST00000457098 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding protein_coding 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 9.2029408 13.4812153 3.237063 0.5208834 1.8696064 -2.0548129 0.23233333 0.322075 0.087450 -0.234625 0.732788879 0.002293681 FALSE  
ENST00000484680 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding retained_intron 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 1.9462529 0.0000000 3.862277 0.0000000 3.8622767 8.5970382 0.04149167 0.000000 0.083325 0.083325 0.992847247 0.002293681 FALSE  
ENST00000495298 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding retained_intron 37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 4.0985837 7.1963496 3.827221 0.5596270 0.9915862 -0.9092068 0.11112500 0.173200 0.121725 -0.051475 0.992847247 0.002293681 FALSE  
MSTRG.15992.1 ENSG00000115207 No_inf pgwt_inf GTF3C2 protein_coding   37.84923 41.90497 33.87384 1.310153 4.227872 -0.3068685 1.2079296 0.0000000 2.676835 0.0000000 0.8329491 8.0697637 0.03476667 0.000000 0.074875 0.074875 0.002293681 0.002293681 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000115207 E001 0.3596331 0.0165187593 0.507561276   2 27325849 27325853 5 - 0.182 0.090 -1.185
ENSG00000115207 E002 0.6047322 0.0149019317 0.557776660   2 27325854 27325863 10 - 0.251 0.164 -0.770
ENSG00000115207 E003 52.5991463 0.0002856771 0.049343808 0.24554419 2 27325864 27326218 355 - 1.679 1.758 0.268
ENSG00000115207 E004 25.8915043 0.0029801537 0.965931844 0.99252784 2 27326219 27326292 74 - 1.425 1.427 0.008
ENSG00000115207 E005 25.6119381 0.0006021318 0.818449489 0.93783909 2 27326293 27326391 99 - 1.429 1.416 -0.046
ENSG00000115207 E006 21.1908518 0.0078991805 0.961066119 0.99072136 2 27326392 27326496 105 - 1.345 1.340 -0.017
ENSG00000115207 E007 45.3191643 0.0003425184 0.318786984 0.64409435 2 27326497 27326674 178 - 1.686 1.643 -0.145
ENSG00000115207 E008 23.8111208 0.0040780247 0.857028142 0.95395943 2 27326675 27326723 49 - 1.384 1.396 0.040
ENSG00000115207 E009 46.9822017 0.0003224854 0.511830105 0.78758842 2 27326724 27326893 170 - 1.693 1.665 -0.094
ENSG00000115207 E010 15.5350099 0.0009288304 0.995519218 1.00000000 2 27327177 27327181 5 - 1.215 1.215 -0.001
ENSG00000115207 E011 34.3593651 0.0003995904 0.530425241 0.79907418 2 27327182 27327284 103 - 1.527 1.558 0.107
ENSG00000115207 E012 42.4756509 0.0004322023 0.004264689 0.05210941 2 27328037 27328188 152 - 1.556 1.686 0.443
ENSG00000115207 E013 11.8706301 0.0037650537 0.057246897 0.26769966 2 27328189 27328189 1 - 1.006 1.170 0.593
ENSG00000115207 E014 4.0472847 0.0037146009 0.032435947 0.19282135 2 27328190 27328320 131 - 0.525 0.798 1.169
ENSG00000115207 E015 2.4088025 0.0060343163 0.069746806 0.29962187 2 27328321 27328404 84 - 0.363 0.625 1.301
ENSG00000115207 E016 1.2096326 0.0113542630 0.410119775 0.71878823 2 27328405 27328467 63 - 0.409 0.283 -0.770
ENSG00000115207 E017 35.2849500 0.0021614355 0.167950021 0.47467363 2 27328468 27328596 129 - 1.595 1.524 -0.245
ENSG00000115207 E018 24.2178980 0.0005678238 0.584960633 0.82963951 2 27328844 27328931 88 - 1.416 1.384 -0.111
ENSG00000115207 E019 32.6208957 0.0004595089 0.710144357 0.89227748 2 27329121 27329282 162 - 1.533 1.514 -0.065
ENSG00000115207 E020 24.2115748 0.0008123675 0.585374571 0.82990111 2 27329379 27329523 145 - 1.416 1.384 -0.111
ENSG00000115207 E021 14.9387670 0.0137258221 0.826887600 0.94145230 2 27333655 27333784 130 - 1.186 1.208 0.078
ENSG00000115207 E022 1.8318613 0.0073994009 0.617552370 0.84621938 2 27333974 27333999 26 - 0.490 0.416 -0.377
ENSG00000115207 E023 0.3939596 0.0309245474 0.132647075   2 27335327 27335597 271 - 0.000 0.228 12.563
ENSG00000115207 E024 0.0000000       2 27335598 27335627 30 -      
ENSG00000115207 E025 0.0000000       2 27335628 27335706 79 -      
ENSG00000115207 E026 0.0000000       2 27335917 27335935 19 -      
ENSG00000115207 E027 0.0000000       2 27335936 27336028 93 -      
ENSG00000115207 E028 0.0000000       2 27336029 27336197 169 -      
ENSG00000115207 E029 0.0000000       2 27336198 27336332 135 -      
ENSG00000115207 E030 0.0000000       2 27336333 27336425 93 -      
ENSG00000115207 E031 0.1316618 0.0122506331 0.611064203   2 27336426 27336767 342 - 0.000 0.090 10.978
ENSG00000115207 E032 0.0000000       2 27337244 27337342 99 -      
ENSG00000115207 E033 0.0000000       2 27337481 27337558 78 -      
ENSG00000115207 E034 1.4380187 0.0092488665 0.170315857 0.47795039 2 27337926 27338020 95 - 0.490 0.283 -1.185
ENSG00000115207 E035 0.1138060 0.0111852615 0.473048990   2 27338021 27338259 239 - 0.101 0.000 -11.550
ENSG00000115207 E036 0.0000000       2 27341948 27342049 102 -      
ENSG00000115207 E037 0.0000000       2 27342050 27342151 102 -      
ENSG00000115207 E038 0.0000000       2 27342152 27342233 82 -      
ENSG00000115207 E039 16.8461100 0.0082049994 0.009588446 0.09041070 2 27342826 27342990 165 - 1.350 1.149 -0.709
ENSG00000115207 E040 19.9597877 0.0007026402 0.224840144 0.54915408 2 27342991 27343147 157 - 1.360 1.282 -0.273
ENSG00000115207 E041 7.8902169 0.0069554974 0.991833897 1.00000000 2 27343308 27343330 23 - 0.946 0.945 -0.004
ENSG00000115207 E042 19.9113224 0.0140694327 0.687592199 0.88067941 2 27343331 27343578 248 - 1.335 1.302 -0.113
ENSG00000115207 E043 1.7188268 0.1136017996 0.836035083 0.94527824 2 27350314 27350399 86 - 0.451 0.416 -0.185
ENSG00000115207 E044 1.6376112 0.2918677764 0.465101914 0.75755166 2 27350400 27350632 233 - 0.311 0.487 0.983
ENSG00000115207 E045 0.3768926 0.2014814037 0.707336199   2 27356087 27356186 100 - 0.101 0.164 0.815
ENSG00000115207 E046 0.2622978 0.2630877221 0.349528422   2 27356187 27356492 306 - 0.000 0.164 11.978
ENSG00000115207 E047 1.3071733 0.0103999135 0.085485548 0.33469178 2 27356739 27356999 261 - 0.490 0.228 -1.600

Help

Please Click HERE to learn more details about the results from DEXseq.