ENSG00000123329

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000550440 ENSG00000123329 No_inf pgwt_inf ARHGAP9 protein_coding retained_intron 119.4394 187.243 85.98932 3.085843 2.979838 -1.122592 52.946121 83.40859 35.732464 3.078396 3.484878 -1.222730 0.44268333 0.446000 0.415300 -0.030700 1.000000e+00 1.38149e-09 FALSE FALSE
ENST00000551452 ENSG00000123329 No_inf pgwt_inf ARHGAP9 protein_coding protein_coding 119.4394 187.243 85.98932 3.085843 2.979838 -1.122592 7.097559 12.94744 6.197037 3.173086 2.222987 -1.061804 0.05470833 0.068600 0.070400 0.001800 1.000000e+00 1.38149e-09 FALSE FALSE
MSTRG.6727.1 ENSG00000123329 No_inf pgwt_inf ARHGAP9 protein_coding   119.4394 187.243 85.98932 3.085843 2.979838 -1.122592 11.624118 23.19746 9.126742 1.780710 1.364648 -1.344837 0.08668333 0.124275 0.105900 -0.018375 9.932366e-01 1.38149e-09 FALSE TRUE
MSTRG.6727.2 ENSG00000123329 No_inf pgwt_inf ARHGAP9 protein_coding   119.4394 187.243 85.98932 3.085843 2.979838 -1.122592 11.992844 0.00000 15.662357 0.000000 1.771244 10.614006 0.14086667 0.000000 0.183525 0.183525 1.381490e-09 1.38149e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000123329 E001 0.0000000       12 57472261 57472261 1 -      
ENSG00000123329 E002 0.0000000       12 57472262 57472263 2 -      
ENSG00000123329 E003 0.0000000       12 57472264 57472264 1 -      
ENSG00000123329 E004 0.0000000       12 57472265 57472265 1 -      
ENSG00000123329 E005 0.0000000       12 57472266 57472268 3 -      
ENSG00000123329 E006 0.3935270 0.0158979375 3.334499e-01   12 57472269 57472269 1 - 0.000 0.180 11.030
ENSG00000123329 E007 0.5243902 0.0157790579 1.930906e-01   12 57472270 57472270 1 - 0.000 0.227 13.800
ENSG00000123329 E008 1.1638979 0.0108627203 1.340922e-01 0.424270866 12 57472271 57472273 3 - 0.130 0.375 1.970
ENSG00000123329 E009 52.9880847 0.0002640800 5.718344e-01 0.822778119 12 57472274 57472476 203 - 1.677 1.702 0.085
ENSG00000123329 E010 131.5028470 0.0001401209 9.019492e-01 0.970899380 12 57472477 57472675 199 - 2.087 2.083 -0.011
ENSG00000123329 E011 58.9246101 0.0009350407 1.786435e-01 0.490761165 12 57472676 57472688 13 - 1.779 1.722 -0.193
ENSG00000123329 E012 69.2757110 0.0002523351 1.065321e-01 0.376898680 12 57473603 57473691 89 - 1.764 1.827 0.214
ENSG00000123329 E013 40.2791196 0.0005692714 2.534765e-02 0.167160837 12 57473692 57473708 17 - 1.493 1.610 0.402
ENSG00000123329 E014 140.3042535 0.0001239570 4.460139e-01 0.744750137 12 57474042 57474173 132 - 2.098 2.118 0.068
ENSG00000123329 E015 41.8254583 0.0008708431 4.798050e-01 0.767484188 12 57474174 57474176 3 - 1.569 1.605 0.123
ENSG00000123329 E016 3.5729609 0.0995696023 3.221702e-01 0.646861084 12 57474269 57474422 154 - 0.491 0.678 0.844
ENSG00000123329 E017 62.0234647 0.0006405504 8.029728e-01 0.932706186 12 57474423 57474451 29 - 1.769 1.759 -0.034
ENSG00000123329 E018 66.9094302 0.0002226459 7.177902e-01 0.896136230 12 57474452 57474474 23 - 1.784 1.798 0.048
ENSG00000123329 E019 53.5195017 0.0002677914 4.305855e-01 0.733735455 12 57474475 57474476 2 - 1.722 1.688 -0.115
ENSG00000123329 E020 98.5521705 0.0001710956 3.300475e-01 0.653838106 12 57474626 57474703 78 - 1.981 1.951 -0.104
ENSG00000123329 E021 74.4917062 0.0015471032 6.333700e-02 0.283834871 12 57474875 57474968 94 - 1.890 1.817 -0.246
ENSG00000123329 E022 26.2603303 0.0005226759 3.522475e-02 0.202725607 12 57474969 57474973 5 - 1.483 1.357 -0.434
ENSG00000123329 E023 21.3745424 0.0010393122 1.595908e-01 0.462295978 12 57474974 57475290 317 - 1.242 1.340 0.346
ENSG00000123329 E024 39.4564129 0.0003524489 9.794252e-01 0.997369290 12 57475291 57475398 108 - 1.569 1.570 0.005
ENSG00000123329 E025 0.2631768 0.0161472302 6.091032e-01   12 57475399 57475411 13 - 0.000 0.128 12.844
ENSG00000123329 E026 0.0000000       12 57475483 57475484 2 -      
ENSG00000123329 E027 0.0000000       12 57475485 57475615 131 -      
ENSG00000123329 E028 3.7847386 0.0156278822 7.472156e-01 0.909452652 12 57475776 57475832 57 - 0.618 0.663 0.192
ENSG00000123329 E029 32.0894721 0.0007639683 5.251334e-01 0.795699893 12 57475833 57475931 99 - 1.507 1.471 -0.122
ENSG00000123329 E030 24.3682332 0.0005727351 2.347582e-01 0.559844576 12 57476071 57476077 7 - 1.418 1.344 -0.257
ENSG00000123329 E031 37.0695453 0.0028326608 1.029076e-01 0.369550838 12 57476078 57476135 58 - 1.604 1.514 -0.306
ENSG00000123329 E032 29.8006978 0.0221495538 5.660169e-02 0.266073123 12 57476136 57476157 22 - 1.552 1.401 -0.520
ENSG00000123329 E033 22.2131698 0.0155398727 2.742313e-01 0.602252046 12 57476158 57476159 2 - 1.388 1.301 -0.302
ENSG00000123329 E034 20.2337470 0.0167223940 3.552794e-01 0.675336438 12 57476160 57476166 7 - 1.342 1.267 -0.265
ENSG00000123329 E035 0.5246759 0.0158235268 1.930418e-01   12 57476167 57476185 19 - 0.000 0.227 13.800
ENSG00000123329 E036 1.3125286 0.0103449247 1.147180e-02 0.101595232 12 57476186 57476260 75 - 0.000 0.433 15.051
ENSG00000123329 E037 4.5184046 0.0044213924 9.539527e-01 0.988680646 12 57476261 57476363 103 - 0.716 0.709 -0.030
ENSG00000123329 E038 27.7164856 0.0038293952 1.890216e-01 0.503204409 12 57476364 57476376 13 - 1.478 1.395 -0.286
ENSG00000123329 E039 42.2924412 0.0018630209 5.638346e-02 0.265513613 12 57476377 57476454 78 - 1.664 1.568 -0.327
ENSG00000123329 E040 26.4812568 0.0005306464 8.109338e-01 0.935619191 12 57476590 57476651 62 - 1.412 1.398 -0.051
ENSG00000123329 E041 23.6692531 0.0006221889 9.917139e-02 0.363111102 12 57476652 57476729 78 - 1.275 1.386 0.385
ENSG00000123329 E042 20.4000941 0.0006886554 9.163366e-02 0.347681637 12 57476730 57476830 101 - 1.205 1.327 0.426
ENSG00000123329 E043 6.2882661 0.0074269399 9.007361e-01 0.970439737 12 57476831 57476870 40 - 0.819 0.834 0.057
ENSG00000123329 E044 2.3068403 0.1263338153 1.004105e-01 0.365176909 12 57476871 57476887 17 - 0.686 0.375 -1.490
ENSG00000123329 E045 0.0000000       12 57476888 57476933 46 -      
ENSG00000123329 E046 6.1575572 0.0423203351 9.988716e-01 1.000000000 12 57476934 57476963 30 - 0.819 0.823 0.014
ENSG00000123329 E047 1.6905859 0.0156804614 3.320200e-02 0.195601091 12 57476964 57477155 192 - 0.130 0.485 2.555
ENSG00000123329 E048 11.4680910 0.0633866545 8.300623e-01 0.942789120 12 57477156 57477213 58 - 1.033 1.072 0.140
ENSG00000123329 E049 8.3682459 0.0220861320 5.082992e-01 0.785570857 12 57477214 57477269 56 - 0.989 0.914 -0.282
ENSG00000123329 E050 0.3939596 0.0306483657 3.364134e-01   12 57477270 57477458 189 - 0.000 0.180 13.312
ENSG00000123329 E051 7.5681220 0.0278166940 6.837242e-01 0.879076382 12 57477459 57477479 21 - 0.863 0.914 0.192
ENSG00000123329 E052 25.0005380 0.0008959443 9.292864e-01 0.980312658 12 57477480 57477542 63 - 1.382 1.376 -0.019
ENSG00000123329 E053 46.3741849 0.0003086887 9.738310e-01 0.995484405 12 57477543 57477676 134 - 1.637 1.638 0.005
ENSG00000123329 E054 8.5343913 0.0315750338 8.913003e-01 0.966766377 12 57477677 57477680 4 - 0.957 0.940 -0.062
ENSG00000123329 E055 6.1624248 0.0671063613 9.762475e-01 0.996226155 12 57477681 57477784 104 - 0.819 0.823 0.015
ENSG00000123329 E056 17.8751136 0.0014755546 7.660099e-01 0.917104231 12 57477785 57478000 216 - 1.224 1.246 0.078
ENSG00000123329 E057 4.0215987 0.0196255512 3.831452e-03 0.048278300 12 57478001 57478198 198 - 0.312 0.763 2.192
ENSG00000123329 E058 4.5721221 0.0031406329 3.079657e-01 0.634407028 12 57478278 57478398 121 - 0.618 0.750 0.555
ENSG00000123329 E059 3.8027468 0.0266224124 4.861234e-01 0.772044122 12 57478399 57478539 141 - 0.580 0.678 0.430
ENSG00000123329 E060 3.5401477 0.0289946391 6.608814e-01 0.867588635 12 57478540 57478757 218 - 0.580 0.646 0.292
ENSG00000123329 E061 2.7861551 0.1671571981 6.953619e-01 0.884264294 12 57479091 57479165 75 - 0.491 0.573 0.385
ENSG00000123329 E062 6.8652440 0.0020117884 1.610787e-01 0.464154569 12 57479166 57479424 259 - 0.744 0.904 0.627
ENSG00000123329 E063 5.2448365 0.0030046212 5.932260e-02 0.273557965 12 57479425 57479632 208 - 0.580 0.823 1.014
ENSG00000123329 E064 4.4256588 0.0324430212 6.257426e-01 0.850204386 12 57479730 57479788 59 - 0.653 0.723 0.292
ENSG00000123329 E065 16.8944796 0.0209093571 4.335563e-05 0.001477264 12 57479789 57480368 580 - 0.863 1.309 1.620
ENSG00000123329 E066 3.4431094 0.0092449666 2.337335e-01 0.559115081 12 57480778 57480834 57 - 0.491 0.663 0.777
ENSG00000123329 E067 2.5910455 0.0501330417 2.860872e-02 0.178967996 12 57483895 57483963 69 - 0.230 0.611 2.140
ENSG00000123329 E068 1.4278707 0.0100301081 6.561946e-02 0.289492268 12 57483964 57484033 70 - 0.130 0.433 2.292
ENSG00000123329 E069 0.0000000       12 57488612 57488814 203 -      

Help

Please Click HERE to learn more details about the results from DEXseq.