ENSG00000124508

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356709 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.4110605 0.3831914 0.05419670 0.2132221 0.05419670 -2.6146610 0.15589167 0.144975 0.022825 -0.122150 0.9716538398 0.0002021149 FALSE TRUE
ENST00000416795 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.6778143 0.0000000 2.03344293 0.0000000 0.26921805 7.6748581 0.23573333 0.000000 0.707200 0.707200 0.0002021149 0.0002021149 FALSE TRUE
ENST00000432533 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.1850332 0.2625048 0.04688702 0.2625048 0.04688702 -2.2601104 0.05670833 0.092600 0.012200 -0.080400 0.9938822000 0.0002021149 FALSE TRUE
ENST00000472507 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.1093518 0.3280555 0.00000000 0.3280555 0.00000000 -5.0791880 0.04195000 0.125850 0.000000 -0.125850 0.9928472467 0.0002021149 FALSE FALSE
ENST00000482842 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.1016634 0.3049903 0.00000000 0.3049903 0.00000000 -4.9772353 0.03834167 0.115025 0.000000 -0.115025 0.9928472467 0.0002021149 FALSE FALSE
ENST00000483410 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.1829291 0.3879542 0.16083317 0.2655388 0.16083317 -1.2200141 0.06336667 0.148250 0.041850 -0.106400 0.9928472467 0.0002021149 FALSE FALSE
ENST00000490025 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.3023857 0.1293763 0.00000000 0.1293763 0.00000000 -3.8009130 0.12209167 0.048800 0.000000 -0.048800 0.9928472467 0.0002021149 FALSE TRUE
ENST00000495632 ENSG00000124508 No_inf pgwt_inf BTN2A2 protein_coding protein_coding 2.763168 2.567112 2.871648 0.1397323 0.3309573 0.1611385 0.2983760 0.3705740 0.43656631 0.1601668 0.16199625 0.2306974 0.12105833 0.154925 0.173400 0.018475 1.0000000000 0.0002021149 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000124508 E001 0.0000000       6 26383096 26383100 5 +      
ENSG00000124508 E002 0.0000000       6 26383101 26383101 1 +      
ENSG00000124508 E003 0.0000000       6 26383102 26383107 6 +      
ENSG00000124508 E004 0.0000000       6 26383108 26383112 5 +      
ENSG00000124508 E005 0.0000000       6 26383113 26383125 13 +      
ENSG00000124508 E006 0.0000000       6 26383126 26383127 2 +      
ENSG00000124508 E007 0.0000000       6 26383128 26383142 15 +      
ENSG00000124508 E008 0.0000000       6 26383143 26383181 39 +      
ENSG00000124508 E009 0.0000000       6 26383182 26383190 9 +      
ENSG00000124508 E010 0.0000000       6 26383191 26383207 17 +      
ENSG00000124508 E011 0.1308632 0.012659551 0.350341906   6 26383208 26383217 10 + 0.000 0.117 10.217
ENSG00000124508 E012 0.1308632 0.012659551 0.350341906   6 26383218 26383244 27 + 0.000 0.117 12.040
ENSG00000124508 E013 0.1308632 0.012659551 0.350341906   6 26383245 26383299 55 + 0.000 0.117 12.040
ENSG00000124508 E014 0.0000000       6 26383300 26383313 14 +      
ENSG00000124508 E015 0.2461098 0.016759117 0.746556868   6 26383433 26383652 220 + 0.077 0.117 0.679
ENSG00000124508 E016 0.3949854 0.523511616 0.170988555   6 26383653 26383791 139 + 0.000 0.286 13.067
ENSG00000124508 E017 0.9997048 0.013549418 0.196394155 0.51322345 6 26383792 26383915 124 + 0.199 0.406 1.416
ENSG00000124508 E018 1.1929099 0.011900449 0.517522604 0.79117998 6 26385015 26385142 128 + 0.372 0.285 -0.544
ENSG00000124508 E019 2.5337771 0.006507559 0.865766296 0.95728532 6 26385143 26385362 220 + 0.546 0.541 -0.022
ENSG00000124508 E020 0.0000000       6 26385363 26385559 197 +      
ENSG00000124508 E021 4.3804183 0.009704711 0.044314766 0.23118059 6 26388013 26388294 282 + 0.807 0.578 -0.959
ENSG00000124508 E022 1.6670843 0.010388905 0.378421539 0.69574308 6 26390005 26390102 98 + 0.468 0.350 -0.643
ENSG00000124508 E023 1.8496311 0.008247098 0.287078105 0.61483204 6 26390103 26390211 109 + 0.372 0.541 0.871
ENSG00000124508 E024 0.1316618 0.012465739 0.350404061   6 26390212 26390686 475 + 0.000 0.117 12.040
ENSG00000124508 E025 1.7361866 0.008153433 0.188489594 0.50274286 6 26390687 26390707 21 + 0.335 0.541 1.094
ENSG00000124508 E026 0.2461098 0.016759117 0.746556868   6 26390708 26390802 95 + 0.077 0.117 0.679
ENSG00000124508 E027 1.2104849 0.010288930 0.990694587 1.00000000 6 26390803 26390829 27 + 0.335 0.350 0.094
ENSG00000124508 E028 3.9444419 0.004747929 0.116667225 0.39516342 6 26390830 26392221 1392 + 0.591 0.797 0.859
ENSG00000124508 E029 0.8334313 0.015445857 0.536718143 0.80302096 6 26392222 26392374 153 + 0.294 0.209 -0.643
ENSG00000124508 E030 18.6954299 0.001180748 0.026236336 0.17063266 6 26392375 26394297 1923 + 1.325 1.233 -0.321
ENSG00000124508 E031 1.1641202 0.012520660 0.002140532 0.03195509 6 26394298 26394874 577 + 0.077 0.541 3.679

Help

Please Click HERE to learn more details about the results from DEXseq.