ENSG00000129566

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000262715 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding protein_coding 33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 1.408325 3.5702449 0.6547303 0.3792573 0.6547303 -2.429217 0.04394167 0.119125 0.012700 -0.106425 0.20922985 0.03658013 FALSE TRUE
ENST00000553365 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding nonsense_mediated_decay 33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 4.004934 6.3046027 1.6901589 0.7412651 0.9967432 -1.893022 0.14413333 0.210425 0.054050 -0.156375 0.71373839 0.03658013 TRUE TRUE
ENST00000555727 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding nonsense_mediated_decay 33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 1.195981 0.0000000 2.3638545 0.0000000 0.2805166 7.891088 0.04357500 0.000000 0.073225 0.073225 0.03658013 0.03658013 TRUE TRUE
ENST00000557314 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding nonsense_mediated_decay 33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 3.660428 6.2663190 2.1601335 0.1766973 1.3091441 -1.532135 0.12014167 0.209650 0.051225 -0.158425 0.65911720 0.03658013 FALSE TRUE
MSTRG.8143.1 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding   33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 1.421709 0.6036374 2.4807219 0.2805703 0.3802937 2.021106 0.05152500 0.020500 0.075200 0.054700 0.96331589 0.03658013 TRUE TRUE
MSTRG.8143.10 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding   33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 1.658781 0.0000000 2.7221000 0.0000000 1.7923578 8.093866 0.06773333 0.000000 0.094250 0.094250 0.99284725 0.03658013 FALSE TRUE
MSTRG.8143.18 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding   33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 8.340270 0.0000000 25.0208109 0.0000000 15.9536616 11.289489 0.11708333 0.000000 0.351250 0.351250 0.98836672 0.03658013   FALSE
MSTRG.8143.5 ENSG00000129566 No_inf pgwt_inf TEP1 protein_coding   33.1885 29.93313 46.74201 0.4686376 15.28175 0.6428035 7.744380 10.4347085 7.7402308 0.8174031 0.9111019 -0.430461 0.27035000 0.348500 0.226400 -0.122100 0.99284725 0.03658013 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000129566 E001 0.1316618 0.0123391885 0.7128798306   14 20365644 20365666 23 - 0.000 0.084 8.227
ENSG00000129566 E002 0.4742377 0.0154640019 0.2020337609   14 20365667 20365677 11 - 0.267 0.084 -2.000
ENSG00000129566 E003 1.2108581 0.0140733376 0.2875643348 0.6152050024 14 20365678 20365696 19 - 0.431 0.267 -0.999
ENSG00000129566 E004 145.9258769 0.0005486428 0.0001523965 0.0041213054 14 20365697 20367103 1407 - 2.098 2.192 0.314
ENSG00000129566 E005 37.3215459 0.0003725467 0.0060003228 0.0659308606 14 20367104 20367630 527 - 1.487 1.622 0.464
ENSG00000129566 E006 11.2866466 0.0015521146 0.1018355968 0.3678582262 14 20367631 20367907 277 - 0.990 1.131 0.514
ENSG00000129566 E007 43.9029875 0.0003714773 0.0000257614 0.0009490423 14 20367908 20368393 486 - 1.514 1.710 0.667
ENSG00000129566 E008 24.9109903 0.0005239710 0.0355085764 0.2037406278 14 20368394 20368559 166 - 1.324 1.449 0.436
ENSG00000129566 E009 16.3407890 0.0008682961 0.2652074165 0.5932565634 14 20368798 20368880 83 - 1.180 1.260 0.281
ENSG00000129566 E010 11.3443538 0.0012181285 0.3845474494 0.6999755143 14 20368881 20368902 22 - 1.037 1.110 0.263
ENSG00000129566 E011 11.7312317 0.0013211709 0.6564693949 0.8658551178 14 20369344 20369366 23 - 1.119 1.080 -0.140
ENSG00000129566 E012 27.5611360 0.0033335199 0.1766474511 0.4878005075 14 20369367 20369554 188 - 1.495 1.412 -0.286
ENSG00000129566 E013 11.5804270 0.0320721564 0.5575798947 0.8150789706 14 20369555 20369576 22 - 1.128 1.065 -0.230
ENSG00000129566 E014 20.1014863 0.0006671025 0.7958940967 0.9297135883 14 20369674 20369779 106 - 1.306 1.321 0.053
ENSG00000129566 E015 16.4785567 0.0019134117 0.2424671457 0.5686871970 14 20371218 20371314 97 - 1.180 1.265 0.299
ENSG00000129566 E016 11.6397134 0.0011903065 0.9024621070 0.9710932538 14 20371489 20371517 29 - 1.100 1.088 -0.044
ENSG00000129566 E017 16.4541411 0.0008717279 0.3131475700 0.6390555454 14 20371518 20371607 90 - 1.188 1.260 0.253
ENSG00000129566 E018 8.5659755 0.0028020829 0.0439727222 0.2304379002 14 20371608 20371632 25 - 0.841 1.040 0.748
ENSG00000129566 E019 14.7853133 0.0017103712 0.6954460582 0.8842642940 14 20372733 20372857 125 - 1.172 1.200 0.100
ENSG00000129566 E020 18.5313637 0.0007505918 0.5036161936 0.7828891016 14 20373011 20373147 137 - 1.254 1.298 0.154
ENSG00000129566 E021 18.1961149 0.0007466164 0.1668780411 0.4729698015 14 20373270 20373402 133 - 1.329 1.233 -0.337
ENSG00000129566 E022 10.7963489 0.0013641921 0.0037521785 0.0475729998 14 20373507 20373583 77 - 1.196 0.947 -0.906
ENSG00000129566 E023 17.0438069 0.0008226494 0.0026242677 0.0370214926 14 20373678 20373783 106 - 1.363 1.151 -0.746
ENSG00000129566 E024 8.9767579 0.0016639169 0.0097708016 0.0913586423 14 20373784 20373810 27 - 1.119 0.879 -0.887
ENSG00000129566 E025 11.5632656 0.0012087081 0.0129399971 0.1095761180 14 20374429 20374536 108 - 1.204 0.996 -0.750
ENSG00000129566 E026 15.0022899 0.0015463896 0.2387738748 0.5645221208 14 20375755 20375868 114 - 1.247 1.157 -0.320
ENSG00000129566 E027 16.8953283 0.0008640783 0.0468308495 0.2384480163 14 20376104 20376264 161 - 1.324 1.182 -0.498
ENSG00000129566 E028 9.8055823 0.0014226424 0.8288417487 0.9422682145 14 20377280 20377358 79 - 1.014 1.032 0.065
ENSG00000129566 E029 10.1076702 0.0015972599 0.3933619096 0.7065867693 14 20377359 20377424 66 - 0.990 1.065 0.275
ENSG00000129566 E030 11.5115617 0.0021757822 0.8343542489 0.9445449032 14 20377425 20377492 68 - 1.100 1.080 -0.072
ENSG00000129566 E031 11.1533075 0.0034139556 0.0033993470 0.0443385560 14 20377600 20377662 63 - 1.211 0.957 -0.922
ENSG00000129566 E032 9.9263127 0.0049533286 0.0035445500 0.0457602095 14 20377663 20377753 91 - 1.172 0.903 -0.985
ENSG00000129566 E033 10.4568302 0.0014229459 0.3349371451 0.6580186176 14 20378024 20378236 213 - 1.100 1.014 -0.313
ENSG00000129566 E034 10.7883506 0.0012906161 0.9322580480 0.9810460836 14 20378380 20378535 156 - 1.059 1.065 0.020
ENSG00000129566 E035 9.8125882 0.0039078327 0.2208094385 0.5445962577 14 20378754 20378853 100 - 1.090 0.977 -0.415
ENSG00000129566 E036 11.5011631 0.0014586627 0.0781256941 0.3188575843 14 20378981 20379105 125 - 1.172 1.023 -0.537
ENSG00000129566 E037 11.2301234 0.0083239516 0.5770255385 0.8252149175 14 20379930 20380053 124 - 1.110 1.057 -0.192
ENSG00000129566 E038 17.6095617 0.0095860381 0.3492553541 0.6700081696 14 20380235 20380475 241 - 1.306 1.228 -0.273
ENSG00000129566 E039 8.5512936 0.0200189483 0.1107939619 0.3845856803 14 20380931 20381045 115 - 0.858 1.032 0.650
ENSG00000129566 E040 9.0045584 0.0015266915 0.2388119771 0.5645750447 14 20381313 20381401 89 - 0.922 1.032 0.409
ENSG00000129566 E041 5.1867868 0.0033279690 0.7705477742 0.9196863352 14 20381553 20381686 134 - 0.804 0.769 -0.139
ENSG00000129566 E042 2.6343013 0.0587782742 0.4329203452 0.7355419889 14 20381913 20381916 4 - 0.474 0.599 0.585
ENSG00000129566 E043 10.4782934 0.0013541236 0.3667424732 0.6855726083 14 20381917 20382063 147 - 1.002 1.080 0.286
ENSG00000129566 E044 6.9232802 0.0022177940 0.8042405661 0.9330202620 14 20382224 20382286 63 - 0.907 0.879 -0.104
ENSG00000129566 E045 6.1070535 0.0024599696 0.5548181910 0.8136209527 14 20382287 20382356 70 - 0.804 0.867 0.244
ENSG00000129566 E046 7.6085282 0.0279853062 0.3462173270 0.6672864720 14 20382623 20382694 72 - 0.990 0.879 -0.415
ENSG00000129566 E047 6.1993900 0.0585326658 0.1424547858 0.4365247493 14 20382695 20382715 21 - 0.964 0.753 -0.813
ENSG00000129566 E048 11.4996261 0.0326386514 0.1787998920 0.4909367470 14 20383174 20383353 180 - 1.172 1.023 -0.538
ENSG00000129566 E049 7.9664511 0.0017615765 0.2115407153 0.5329668319 14 20383488 20383644 157 - 1.014 0.891 -0.459
ENSG00000129566 E050 7.5620390 0.0340161805 0.9705849953 0.9945036642 14 20383743 20383918 176 - 0.922 0.925 0.014
ENSG00000129566 E051 8.7826223 0.0139005337 0.0856307607 0.3350771257 14 20384038 20384232 195 - 1.080 0.903 -0.656
ENSG00000129566 E052 6.2536213 0.0027479497 0.3211367997 0.6458015057 14 20384391 20384508 118 - 0.784 0.891 0.416
ENSG00000129566 E053 5.4666271 0.0026418627 0.7832067129 0.9248623498 14 20384600 20384713 114 - 0.784 0.814 0.116
ENSG00000129566 E054 6.2488618 0.0035444704 0.2594077939 0.5870458754 14 20384985 20385109 125 - 0.922 0.799 -0.471
ENSG00000129566 E055 8.8350391 0.0112265044 0.2736403281 0.6019338855 14 20386075 20386195 121 - 1.048 0.936 -0.414
ENSG00000129566 E056 7.1728507 0.0034000753 0.7817866384 0.9245043904 14 20386447 20386623 177 - 0.922 0.891 -0.115
ENSG00000129566 E057 7.6473472 0.0585865851 0.7043536920 0.8893378388 14 20387905 20388063 159 - 0.964 0.903 -0.228
ENSG00000129566 E058 4.8658305 0.0049164483 0.5736199066 0.8238923173 14 20389238 20389297 60 - 0.719 0.785 0.264
ENSG00000129566 E059 3.5223009 0.0118052603 0.2554648552 0.5825933200 14 20389610 20389641 32 - 0.549 0.702 0.664
ENSG00000129566 E060 6.6795236 0.0022610754 0.8300968418 0.9427891200 14 20389642 20389740 99 - 0.891 0.867 -0.093
ENSG00000129566 E061 5.0589030 0.0031306534 0.6685310168 0.8714888457 14 20390681 20390758 78 - 0.804 0.753 -0.203
ENSG00000129566 E062 9.4428854 0.0059817791 0.1989656667 0.5168370958 14 20390938 20391096 159 - 1.080 0.957 -0.452
ENSG00000129566 E063 9.7366126 0.0017396170 0.4953907486 0.7773436576 14 20391599 20391767 169 - 1.059 0.996 -0.232
ENSG00000129566 E064 9.4568104 0.0075560306 0.2920434908 0.6201368301 14 20395450 20395627 178 - 1.070 0.967 -0.377
ENSG00000129566 E065 5.0438752 0.0264353302 0.4944513578 0.7767522660 14 20395859 20395949 91 - 0.823 0.737 -0.344
ENSG00000129566 E066 5.8639788 0.0025922807 0.5181724814 0.7914404183 14 20396621 20396730 110 - 0.784 0.854 0.273
ENSG00000129566 E067 0.3423510 0.0156828048 0.0592796700   14 20400667 20400983 317 - 0.267 0.000 -13.825
ENSG00000129566 E068 6.5183781 0.0023260274 0.2225736337 0.5465610521 14 20400984 20401141 158 - 0.784 0.914 0.503
ENSG00000129566 E069 4.2519266 0.0704064258 0.2023203226 0.5214787651 14 20401457 20401581 125 - 0.823 0.621 -0.829
ENSG00000129566 E070 4.2581859 0.0033669024 0.3659161062 0.6847049148 14 20403377 20403448 72 - 0.643 0.753 0.460
ENSG00000129566 E071 3.7041196 0.0037945720 0.0122488671 0.1059163227 14 20403449 20403722 274 - 0.431 0.769 1.524
ENSG00000129566 E072 7.0377740 0.0122966939 0.7062095928 0.8902413194 14 20403723 20403884 162 - 0.922 0.879 -0.161
ENSG00000129566 E073 6.9633308 0.0223168536 0.0335240250 0.1966253884 14 20404611 20404772 162 - 0.719 0.977 1.001
ENSG00000129566 E074 4.6951784 0.0427712022 0.8946427319 0.9683754193 14 20405451 20405585 135 - 0.764 0.737 -0.109
ENSG00000129566 E075 3.0932827 0.0046403927 0.9199823394 0.9768091623 14 20406233 20406285 53 - 0.614 0.599 -0.067
ENSG00000129566 E076 6.3692543 0.0022891849 0.4107964420 0.7193959268 14 20406286 20406400 115 - 0.804 0.891 0.337
ENSG00000129566 E077 3.1906355 0.0245590302 0.5043524020 0.7834095083 14 20407873 20407941 69 - 0.670 0.575 -0.415
ENSG00000129566 E078 10.2757489 0.0014905625 0.0867565673 0.3375272358 14 20407942 20408463 522 - 1.128 0.977 -0.552
ENSG00000129566 E079 0.2448134 0.0163124426 0.8264339708   14 20412724 20412746 23 - 0.108 0.084 -0.415
ENSG00000129566 E080 1.4724939 0.0088301802 0.6291468418 0.8515562898 14 20413371 20413404 34 - 0.431 0.356 -0.415
ENSG00000129566 E081 2.0602523 0.0067642784 0.1954391340 0.5121726746 14 20413405 20413501 97 - 0.583 0.395 -0.929

Help

Please Click HERE to learn more details about the results from DEXseq.