ENSG00000130304

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000252595 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding protein_coding 17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 6.428801 6.583086 6.9851797 1.2691891 0.5650679 0.08540726 0.38491667 0.270250 0.457375 0.187125 0.96575768 0.03305728 FALSE TRUE
ENST00000598848 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding protein_coding_CDS_not_defined 17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 1.061521 1.501898 0.8757418 1.5018984 0.8757418 -0.77140309 0.06022500 0.064775 0.059650 -0.005125 1.00000000 0.03305728 FALSE TRUE
ENST00000599380 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding nonsense_mediated_decay 17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 1.433749 1.513841 1.7309928 0.1209218 0.3310138 0.19219746 0.08447500 0.062925 0.112250 0.049325 0.99284725 0.03305728 FALSE TRUE
ENST00000599965 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding protein_coding 17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 4.546246 7.271402 3.2313338 2.4356278 1.3148657 -1.16762865 0.24590000 0.297150 0.202900 -0.094250 0.99330918 0.03305728 FALSE TRUE
MSTRG.14756.6 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding   17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 1.004935 2.657792 0.0000000 0.8304338 0.0000000 -8.05950258 0.04564167 0.110950 0.000000 -0.110950 0.03305728 0.03305728 FALSE TRUE
MSTRG.14756.8 ENSG00000130304 No_inf pgwt_inf SLC27A1 protein_coding   17.65314 24.14859 15.36041 0.43592 0.6418428 -0.6523807 1.349273 2.334902 1.0071474 1.4829278 1.0071474 -1.20499880 0.07237500 0.099325 0.068600 -0.030725 0.99284725 0.03305728 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000130304 E001 0.0000000       19 17468769 17469010 242 +      
ENSG00000130304 E002 0.7538784 0.0932087753 0.8437322253 0.94827108 19 17470489 17470523 35 + 0.212 0.246 0.273
ENSG00000130304 E003 0.7538784 0.0932087753 0.8437322253 0.94827108 19 17470524 17470527 4 + 0.212 0.246 0.273
ENSG00000130304 E004 1.1304951 0.1202719385 0.8457673138 0.94911968 19 17470528 17470537 10 + 0.289 0.331 0.273
ENSG00000130304 E005 1.1304951 0.1202719385 0.8457673138 0.94911968 19 17470538 17470539 2 + 0.289 0.331 0.273
ENSG00000130304 E006 6.0563446 0.1246268240 0.4495755347 0.74764039 19 17470540 17470707 168 + 0.899 0.788 -0.431
ENSG00000130304 E007 0.8684165 0.0129345657 0.7828978736 0.92479942 19 17483882 17484121 240 + 0.289 0.246 -0.312
ENSG00000130304 E008 16.2088356 0.0008803836 0.1223806462 0.40495537 19 17486563 17486957 395 + 1.285 1.173 -0.395
ENSG00000130304 E009 2.1978715 0.0073560829 0.0169764011 0.13048177 19 17486958 17487099 142 + 0.212 0.586 2.180
ENSG00000130304 E010 2.7679832 0.0053506666 0.5653779288 0.81874977 19 17487100 17487173 74 + 0.506 0.586 0.372
ENSG00000130304 E011 12.7060924 0.0018395160 0.7577747592 0.91398521 19 17487174 17487335 162 + 1.134 1.107 -0.095
ENSG00000130304 E012 4.3102233 0.0432919126 0.2346282465 0.55980426 19 17487460 17487466 7 + 0.584 0.760 0.747
ENSG00000130304 E013 9.0449622 0.0121612099 0.4710819147 0.76181077 19 17487467 17487529 63 + 0.932 1.006 0.273
ENSG00000130304 E014 0.0000000       19 17488760 17488847 88 +      
ENSG00000130304 E015 6.2858360 0.0342474078 0.2491945310 0.57616467 19 17488848 17488939 92 + 0.932 0.788 -0.557
ENSG00000130304 E016 0.4901982 0.4616756041 0.6905187512   19 17489008 17489117 110 + 0.212 0.140 -0.727
ENSG00000130304 E017 6.0004084 0.0023505498 0.0154766665 0.12280932 19 17495415 17497254 1840 + 0.618 0.905 1.160
ENSG00000130304 E018 16.0314144 0.0009963009 0.5404124633 0.80523563 19 17497255 17497464 210 + 1.181 1.225 0.156
ENSG00000130304 E019 11.9429587 0.0013252236 0.0004840131 0.01031072 19 17497465 17499398 1934 + 1.256 0.972 -1.023
ENSG00000130304 E020 0.1138060 0.0111619467 0.3182389801   19 17499870 17499954 85 + 0.119 0.000 -9.619
ENSG00000130304 E021 13.6037834 0.0014073741 0.1437472179 0.43856287 19 17500278 17500365 88 + 1.216 1.101 -0.411
ENSG00000130304 E022 7.6581692 0.0072217387 0.2514702341 0.57847852 19 17500366 17500404 39 + 0.992 0.873 -0.447
ENSG00000130304 E023 12.0634357 0.0168633211 0.6543818561 0.86527846 19 17500495 17500632 138 + 1.123 1.081 -0.154
ENSG00000130304 E024 0.8674893 0.0129985140 0.7848238946 0.92547277 19 17500633 17500711 79 + 0.289 0.246 -0.312
ENSG00000130304 E025 14.1981433 0.0013770715 0.7014159320 0.88773373 19 17500712 17500876 165 + 1.181 1.150 -0.110
ENSG00000130304 E026 0.7530865 0.0214487626 0.8260942539 0.94123540 19 17500877 17500886 10 + 0.212 0.246 0.273
ENSG00000130304 E027 4.2926780 0.0040575252 0.3135958505 0.63955241 19 17501273 17501280 8 + 0.618 0.746 0.536
ENSG00000130304 E028 17.0513704 0.0008278180 0.4355907723 0.73767096 19 17501281 17501419 139 + 1.199 1.254 0.194
ENSG00000130304 E029 177.9868933 0.0001387617 0.1026943158 0.36917657 19 17504455 17506169 1715 + 2.214 2.240 0.087

Help

Please Click HERE to learn more details about the results from DEXseq.