ENSG00000142687

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000325722 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding protein_coding 24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 8.9107324 5.992577 9.443140 1.2180423 0.4372199 0.6552116 0.36520000 0.254425 0.381250 0.126825 0.992847247 0.003325545 FALSE  
ENST00000373266 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding protein_coding_CDS_not_defined 24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 0.6770011 0.000000 2.031003 0.0000000 1.2154580 7.6731346 0.02400000 0.000000 0.072000 0.072000 0.966924173 0.003325545 FALSE  
ENST00000473423 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding retained_intron 24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 0.6731877 1.455612 0.000000 0.4890569 0.0000000 -7.1953599 0.02729167 0.058325 0.000000 -0.058325 0.281368237 0.003325545    
ENST00000473844 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding protein_coding_CDS_not_defined 24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 1.5125968 0.000000 2.493321 0.0000000 2.4933215 7.9676998 0.05006667 0.000000 0.079475 0.079475 0.992847247 0.003325545 FALSE  
MSTRG.698.2 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding   24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 8.1686168 11.787141 5.988476 1.3804419 1.0266681 -0.9757693 0.33935833 0.484850 0.251350 -0.233500 0.879824571 0.003325545 FALSE  
MSTRG.698.4 ENSG00000142687 No_inf pgwt_inf KIAA0319L protein_coding   24.66092 24.13409 25.17765 0.9782175 2.17522 0.0610463 1.1060979 0.000000 2.314439 0.0000000 0.3255421 7.8607389 0.04555000 0.000000 0.095200 0.095200 0.003325545 0.003325545 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000142687 E001 0.0000000       1 35393883 35393910 28 -      
ENSG00000142687 E002 0.0000000       1 35394433 35394526 94 -      
ENSG00000142687 E003 0.0000000       1 35397335 35397556 222 -      
ENSG00000142687 E004 0.8850242 0.0156430033 2.679956e-01 5.961697e-01 1 35433492 35433503 12 - 0.175 0.345 1.293
ENSG00000142687 E005 1.7177447 0.0103794568 9.655421e-01 9.924282e-01 1 35433504 35433516 13 - 0.436 0.431 -0.029
ENSG00000142687 E006 31.6405254 0.0028730257 5.541328e-01 8.133108e-01 1 35433517 35433743 227 - 1.494 1.528 0.117
ENSG00000142687 E007 64.5369082 0.0014769714 1.425536e-01 4.368023e-01 1 35433744 35434104 361 - 1.782 1.841 0.198
ENSG00000142687 E008 6.3653516 0.0022687879 7.214328e-01 8.976125e-01 1 35434105 35434118 14 - 0.885 0.849 -0.140
ENSG00000142687 E009 5.8916215 0.0024301181 9.374018e-01 9.831066e-01 1 35434119 35434119 1 - 0.841 0.834 -0.029
ENSG00000142687 E010 5.8913358 0.0024359366 9.374348e-01 9.831066e-01 1 35434120 35434120 1 - 0.841 0.834 -0.029
ENSG00000142687 E011 9.3821320 0.0021754188 5.619518e-01 8.170179e-01 1 35434121 35434138 18 - 0.985 1.039 0.200
ENSG00000142687 E012 9.3644230 0.0017551632 7.226893e-01 8.981298e-01 1 35434139 35434142 4 - 0.996 1.029 0.123
ENSG00000142687 E013 12.0483232 0.0011879064 9.310350e-01 9.807700e-01 1 35434143 35434171 29 - 1.110 1.118 0.030
ENSG00000142687 E014 10.8574304 0.0102646540 6.393565e-01 8.570455e-01 1 35434172 35434188 17 - 1.047 1.093 0.169
ENSG00000142687 E015 8.1570563 0.0264548302 6.097106e-01 8.425583e-01 1 35434189 35434198 10 - 0.925 0.988 0.235
ENSG00000142687 E016 7.0258206 0.0838848184 9.393338e-01 9.839669e-01 1 35434199 35434206 8 - 0.885 0.918 0.124
ENSG00000142687 E017 11.6899138 0.0376032515 9.189685e-01 9.764098e-01 1 35434207 35434247 41 - 1.093 1.110 0.063
ENSG00000142687 E018 8.7232493 0.0017979919 9.844504e-01 9.991501e-01 1 35434248 35434274 27 - 0.985 0.988 0.012
ENSG00000142687 E019 10.9843550 0.0013512473 5.306912e-01 7.992237e-01 1 35434275 35434325 51 - 1.047 1.102 0.199
ENSG00000142687 E020 7.3004331 0.0019542223 4.152100e-01 7.225884e-01 1 35434326 35434368 43 - 0.871 0.954 0.315
ENSG00000142687 E021 8.0874887 0.0017613813 1.308905e-01 4.196786e-01 1 35434369 35434397 29 - 0.871 1.019 0.556
ENSG00000142687 E022 70.5717315 0.0002685363 1.080166e-01 3.794949e-01 1 35434398 35434893 496 - 1.821 1.879 0.194
ENSG00000142687 E023 39.5318111 0.0012548994 9.242356e-01 9.785164e-01 1 35434894 35435081 188 - 1.608 1.605 -0.011
ENSG00000142687 E024 3.8546528 0.0039579057 2.049955e-04 5.214371e-03 1 35435305 35435597 293 - 0.350 0.849 2.293
ENSG00000142687 E025 16.7776540 0.0008565901 4.375070e-02 2.299099e-01 1 35438542 35441046 2505 - 1.164 1.309 0.512
ENSG00000142687 E026 27.6005215 0.0006335787 8.093871e-01 9.352018e-01 1 35441047 35441138 92 - 1.462 1.449 -0.041
ENSG00000142687 E027 0.5084227 0.0251590570 3.336703e-01   1 35441139 35441242 104 - 0.096 0.237 1.556
ENSG00000142687 E028 0.3766141 0.0165768778 5.981958e-01   1 35441243 35441322 80 - 0.096 0.172 0.971
ENSG00000142687 E029 4.1661687 0.0048759662 1.234661e-07 8.490055e-06 1 35441323 35442245 923 - 0.175 0.918 3.878
ENSG00000142687 E030 15.7219511 0.0060710562 9.744671e-01 9.954935e-01 1 35442246 35442266 21 - 1.220 1.224 0.016
ENSG00000142687 E031 22.8684105 0.0009909915 7.787711e-01 9.232829e-01 1 35442267 35442336 70 - 1.366 1.385 0.065
ENSG00000142687 E032 2.5572317 0.0790861848 2.018535e-02 1.449424e-01 1 35442337 35442905 569 - 0.299 0.688 1.971
ENSG00000142687 E033 30.1540577 0.0005097314 5.994898e-01 8.373889e-01 1 35442906 35443028 123 - 1.476 1.506 0.101
ENSG00000142687 E034 1.1306589 0.0110277982 3.346184e-01 6.577071e-01 1 35443029 35443261 233 - 0.241 0.390 0.971
ENSG00000142687 E035 0.3592742 0.0165686607 5.693519e-01   1 35443262 35443335 74 - 0.175 0.094 -1.029
ENSG00000142687 E036 3.7516392 0.0038158279 1.645690e-01 4.696689e-01 1 35443336 35444035 700 - 0.571 0.749 0.760
ENSG00000142687 E037 0.2628107 0.0160757463 2.505016e-01   1 35444036 35444160 125 - 0.000 0.172 12.029
ENSG00000142687 E038 9.6048455 0.0015340503 7.273419e-01 9.003081e-01 1 35444161 35444164 4 - 1.006 1.039 0.119
ENSG00000142687 E039 29.2625140 0.0004788482 1.079934e-01 3.794705e-01 1 35444165 35444303 139 - 1.524 1.438 -0.294
ENSG00000142687 E040 0.7530767 0.0142308317 4.303514e-01 7.335249e-01 1 35447046 35447233 188 - 0.175 0.294 0.971
ENSG00000142687 E041 0.1311489 0.0122475840 5.507887e-01   1 35447598 35447615 18 - 0.000 0.094 11.099
ENSG00000142687 E042 0.5243902 0.0160132678 4.759994e-02   1 35447616 35448172 557 - 0.000 0.294 12.944
ENSG00000142687 E043 28.0678874 0.0009330814 1.768222e-01 4.880472e-01 1 35448173 35448332 160 - 1.501 1.426 -0.255
ENSG00000142687 E044 24.1971191 0.0006383226 3.098462e-01 6.361579e-01 1 35449867 35450005 139 - 1.431 1.372 -0.204
ENSG00000142687 E045 0.1138060 0.0111573254 5.257820e-01   1 35450006 35450006 1 - 0.096 0.000 -11.969
ENSG00000142687 E046 7.9491967 0.0354900931 7.194341e-01 8.970343e-01 1 35450358 35450364 7 - 0.973 0.930 -0.162
ENSG00000142687 E047 22.2150585 0.0006614856 9.353734e-01 9.822751e-01 1 35450365 35450509 145 - 1.366 1.363 -0.013
ENSG00000142687 E048 0.1316618 0.0122773069 5.508370e-01   1 35451524 35451627 104 - 0.000 0.094 11.098
ENSG00000142687 E049 8.7705529 0.0015998703 4.668089e-01 7.585717e-01 1 35451628 35451634 7 - 0.950 1.019 0.257
ENSG00000142687 E050 21.3989249 0.0013679630 4.129153e-01 7.208636e-01 1 35451635 35451776 142 - 1.376 1.325 -0.177
ENSG00000142687 E051 0.0000000       1 35451777 35451791 15 -      
ENSG00000142687 E052 0.1311489 0.0122475840 5.507887e-01   1 35453553 35453556 4 - 0.000 0.094 11.099
ENSG00000142687 E053 16.3943318 0.0009289818 5.169392e-01 7.909000e-01 1 35453557 35453689 133 - 1.263 1.218 -0.158
ENSG00000142687 E054 0.0000000       1 35454237 35454361 125 -      
ENSG00000142687 E055 14.7220093 0.0009545229 1.376132e-01 4.296244e-01 1 35454362 35454485 124 - 1.251 1.141 -0.388
ENSG00000142687 E056 0.2277562 0.0153968898 2.343774e-01   1 35454486 35454613 128 - 0.175 0.000 -12.887
ENSG00000142687 E057 0.0000000       1 35454614 35454707 94 -      
ENSG00000142687 E058 0.7360294 0.4533848167 8.900801e-01 9.661474e-01 1 35455615 35456012 398 - 0.241 0.237 -0.028
ENSG00000142687 E059 23.0448207 0.0006033493 1.285279e-02 1.091685e-01 1 35456013 35456241 229 - 1.454 1.304 -0.519
ENSG00000142687 E060 8.0453682 0.0019970234 4.109440e-01 7.195604e-01 1 35460305 35460307 3 - 0.996 0.918 -0.292
ENSG00000142687 E061 14.6909946 0.0009223669 6.247246e-01 8.498142e-01 1 35460308 35460373 66 - 1.213 1.178 -0.125
ENSG00000142687 E062 13.4687343 0.0010266653 3.530805e-01 6.732143e-01 1 35460374 35460433 60 - 1.118 1.192 0.264
ENSG00000142687 E063 6.2007983 0.0057941704 3.065787e-01 6.331900e-01 1 35460434 35460437 4 - 0.792 0.905 0.437
ENSG00000142687 E064 2.6187680 0.0068344581 3.036511e-01 6.305100e-01 1 35460438 35462620 2183 - 0.474 0.618 0.672
ENSG00000142687 E065 12.5557302 0.0224759538 4.507017e-01 7.482901e-01 1 35462621 35462713 93 - 1.172 1.093 -0.281
ENSG00000142687 E066 0.8668926 0.2746425082 6.920774e-01 8.828720e-01 1 35464534 35464928 395 - 0.241 0.294 0.387
ENSG00000142687 E067 10.0473726 0.0023266606 7.906458e-04 1.498473e-02 1 35466608 35466695 88 - 1.179 0.878 -1.107
ENSG00000142687 E068 10.6838679 0.0174517825 1.664184e-01 4.725082e-01 1 35470863 35470960 98 - 1.134 0.999 -0.492
ENSG00000142687 E069 0.6227238 0.0199629975 6.764698e-01   1 35473132 35474804 1673 - 0.175 0.237 0.556
ENSG00000142687 E070 7.1195902 0.0021927611 9.305154e-01 9.806286e-01 1 35474805 35474868 64 - 0.912 0.905 -0.029
ENSG00000142687 E071 4.3565400 0.0040264788 2.699099e-01 5.980346e-01 1 35474869 35474906 38 - 0.650 0.785 0.556
ENSG00000142687 E072 0.3766167 0.0166842848 5.982038e-01   1 35476269 35476595 327 - 0.096 0.172 0.971
ENSG00000142687 E073 12.4559571 0.0011052424 2.928368e-02 1.814445e-01 1 35478966 35479212 247 - 1.213 1.039 -0.625
ENSG00000142687 E074 0.9020358 0.0197452427 5.469622e-02 2.614446e-01 1 35504087 35506611 2525 - 0.096 0.390 2.556
ENSG00000142687 E075 7.1650350 0.0020729133 2.112434e-01 5.325071e-01 1 35506612 35506738 127 - 0.973 0.849 -0.472
ENSG00000142687 E076 22.0864292 0.0007188295 2.567462e-02 1.684958e-01 1 35506739 35507135 397 - 1.431 1.294 -0.476
ENSG00000142687 E077 0.1138060 0.0111573254 5.257820e-01   1 35533096 35533441 346 - 0.096 0.000 -11.969
ENSG00000142687 E078 0.4561064 0.0159447438 4.278449e-02   1 35538466 35538583 118 - 0.299 0.000 -13.784
ENSG00000142687 E079 7.5725133 0.0046310823 5.608065e-01 8.164932e-01 1 35554350 35554519 170 - 0.962 0.905 -0.215
ENSG00000142687 E080 0.0000000       1 35554789 35554899 111 -      
ENSG00000142687 E081 0.0000000       1 35554900 35554987 88 -      
ENSG00000142687 E082 0.0000000       1 35556471 35556757 287 -      
ENSG00000142687 E083 0.0000000       1 35557048 35557206 159 -      
ENSG00000142687 E084 4.6455835 0.0679180817 7.260190e-01 8.997022e-01 1 35557207 35557361 155 - 0.774 0.729 -0.181
ENSG00000142687 E085 1.8949358 0.0177237092 4.295507e-02 2.276136e-01 1 35557362 35557433 72 - 0.598 0.294 -1.614
ENSG00000142687 E086 0.0000000       1 35557550 35557655 106 -      
ENSG00000142687 E087 0.0000000       1 35557711 35557950 240 -      

Help

Please Click HERE to learn more details about the results from DEXseq.