ENSG00000156162

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000414645 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding protein_coding 10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 5.5366928 4.1482991 5.3332740 1.0527120 0.4961427 0.3617305 0.56080833 0.374350 0.587250 0.212900 0.9928472467 0.0004381488 FALSE TRUE
ENST00000519176 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding protein_coding 10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 0.5996015 0.0000000 0.3981246 0.0000000 0.2435533 5.3509378 0.06035833 0.000000 0.046725 0.046725 0.9589918303 0.0004381488 FALSE TRUE
ENST00000520774 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding nonsense_mediated_decay 10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 0.6522226 0.5392511 1.1003992 0.5392511 0.7348940 1.0155408 0.05975833 0.042850 0.103125 0.060275 0.9928472467 0.0004381488   FALSE
ENST00000521525 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding protein_coding 10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 0.7983288 1.3184444 0.9310703 0.1634130 0.3997412 -0.4973634 0.07523333 0.118600 0.093775 -0.024825 0.9928472467 0.0004381488   FALSE
ENST00000522669 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding nonsense_mediated_decay 10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 1.0743737 3.0867863 0.0000000 0.2742472 0.0000000 -8.2746280 0.09584167 0.275050 0.000000 -0.275050 0.0004381488 0.0004381488 FALSE FALSE
MSTRG.27946.4 ENSG00000156162 No_inf pgwt_inf DPY19L4 protein_coding   10.18487 11.2417 9.22476 0.5587038 0.812036 -0.2849964 0.7115524 1.1999458 0.9347114 1.0299333 0.5474965 -0.3569969 0.07249167 0.106125 0.111350 0.005225 1.0000000000 0.0004381488 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000156162 E001 0.2625250 0.016080562 0.2750219147   8 94719703 94719874 172 + 0.000 0.170 9.326
ENSG00000156162 E002 0.3423004 0.022746797 0.0874413957   8 94719875 94719899 25 + 0.243 0.000 -13.032
ENSG00000156162 E003 3.0899437 0.005177725 0.0092413875 0.08831758 8 94719900 94720014 115 + 0.760 0.428 -1.502
ENSG00000156162 E004 3.4044229 0.115839478 0.4766337405 0.76556222 8 94726331 94726395 65 + 0.699 0.588 -0.477
ENSG00000156162 E005 2.5865378 0.082192876 0.9990676279 1.00000000 8 94726396 94726401 6 + 0.544 0.561 0.076
ENSG00000156162 E006 3.2095456 0.066676601 0.8798221796 0.96197333 8 94726402 94726441 40 + 0.602 0.639 0.160
ENSG00000156162 E007 4.3528661 0.022784261 0.1395117581 0.43239679 8 94734630 94734754 125 + 0.813 0.639 -0.714
ENSG00000156162 E008 3.3663132 0.056395609 0.1244960235 0.40877016 8 94738369 94738459 91 + 0.741 0.531 -0.910
ENSG00000156162 E009 5.3765875 0.002610585 0.0042224999 0.05174414 8 94739413 94739519 107 + 0.942 0.639 -1.208
ENSG00000156162 E010 2.9118516 0.005176834 0.3013120729 0.62872736 8 94739520 94739534 15 + 0.653 0.531 -0.547
ENSG00000156162 E011 2.5866213 0.006423184 0.9935986764 1.00000000 8 94739645 94739649 5 + 0.544 0.561 0.076
ENSG00000156162 E012 8.3285191 0.002312102 0.5361208847 0.80265170 8 94739650 94739790 141 + 0.989 0.950 -0.146
ENSG00000156162 E013 1.2440181 0.010922181 0.6266935992 0.85051274 8 94744343 94744484 142 + 0.301 0.387 0.523
ENSG00000156162 E014 4.0242084 0.003707480 0.4359249343 0.73788378 8 94744485 94745084 600 + 0.741 0.662 -0.325
ENSG00000156162 E015 6.5322343 0.039103204 0.9584464597 0.98978717 8 94756036 94756159 124 + 0.860 0.887 0.102
ENSG00000156162 E016 1.9819455 0.011254322 0.7550354939 0.91275509 8 94761700 94761701 2 + 0.439 0.499 0.301
ENSG00000156162 E017 5.3842122 0.002773988 0.5462834398 0.80888103 8 94761702 94761834 133 + 0.829 0.781 -0.193
ENSG00000156162 E018 4.7537866 0.004400946 0.0016369808 0.02609633 8 94765183 94765314 132 + 0.917 0.561 -1.460
ENSG00000156162 E019 6.8544093 0.002288651 0.5429618342 0.80691993 8 94765711 94765809 99 + 0.917 0.873 -0.165
ENSG00000156162 E020 6.5528194 0.003982365 0.0140360644 0.11579153 8 94766612 94766685 74 + 0.699 0.984 1.108
ENSG00000156162 E021 8.3666380 0.002608705 0.0873707634 0.33897277 8 94768395 94768553 159 + 0.860 1.044 0.687
ENSG00000156162 E022 7.0304944 0.002670423 0.0975312298 0.35982816 8 94770452 94770571 120 + 0.978 0.829 -0.564
ENSG00000156162 E023 3.1567134 0.004598308 0.3120676367 0.63809822 8 94777666 94777677 12 + 0.677 0.561 -0.509
ENSG00000156162 E024 6.1648563 0.003457856 0.0630411020 0.28304724 8 94777678 94777786 109 + 0.942 0.763 -0.694
ENSG00000156162 E025 5.5566649 0.002902378 0.0747940511 0.31085674 8 94780359 94780415 57 + 0.903 0.725 -0.699
ENSG00000156162 E026 6.5391340 0.002396376 0.0897407648 0.34382060 8 94781084 94781166 83 + 0.954 0.797 -0.602
ENSG00000156162 E027 8.4833404 0.032180769 0.2100338765 0.53104679 8 94783670 94783802 133 + 0.875 1.044 0.630
ENSG00000156162 E028 10.3627058 0.003323023 0.8145764795 0.93677467 8 94787894 94788052 159 + 1.032 1.071 0.145
ENSG00000156162 E029 122.4044627 0.006009806 0.0005084788 0.01068611 8 94789746 94793836 4091 + 2.023 2.138 0.383

Help

Please Click HERE to learn more details about the results from DEXseq.