ENSG00000156500

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000414371 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding protein_coding 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.2624662 0.2650290 0.26886603 0.11664746 0.15775777 0.01998862 0.05267500 0.040450 0.022750 -0.017700 0.99284725 0.01658469 FALSE FALSE
ENST00000475361 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding protein_coding 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.3589243 0.8209573 0.25581565 0.47549626 0.25581565 -1.64434836 0.04539167 0.094500 0.041675 -0.052825 0.97165384 0.01658469   FALSE
ENST00000494709 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding protein_coding 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 1.0082582 2.1544122 0.87036249 2.15441219 0.87036249 -1.29780569 0.07870000 0.094350 0.141750 0.047400 0.99284725 0.01658469   FALSE
ENST00000644752 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding nonsense_mediated_decay 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.2625031 0.7875092 0.00000000 0.26845481 0.00000000 -6.31742921 0.04432500 0.132975 0.000000 -0.132975 0.20305508 0.01658469 FALSE FALSE
ENST00000645176 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding nonsense_mediated_decay 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.4979203 1.1568034 0.06418957 0.15198839 0.06418957 -3.97520129 0.09087500 0.166600 0.001550 -0.165050 0.01658469 0.01658469 FALSE FALSE
ENST00000645256 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding retained_intron 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.4876876 0.9025118 0.43505828 0.08604908 0.15787832 -1.03584893 0.06093333 0.123625 0.022325 -0.101300 0.38599587 0.01658469 FALSE TRUE
ENST00000645288 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding protein_coding 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.2679656 0.3984819 0.00000000 0.39848191 0.00000000 -5.35220027 0.06625000 0.049350 0.000000 -0.049350 0.99284725 0.01658469 FALSE TRUE
ENST00000647516 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding protein_coding 20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.1083792 0.3251375 0.00000000 0.32513752 0.00000000 -5.06668132 0.02135000 0.064050 0.000000 -0.064050 0.99284725 0.01658469 FALSE TRUE
MSTRG.30485.20 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding   20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 14.9466830 0.0000000 44.84004914 0.00000000 17.20361840 12.13089385 0.23161667 0.000000 0.694850 0.694850 0.11665495 0.01658469   FALSE
MSTRG.30485.23 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding   20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 1.3629674 3.1883757 0.90052647 2.28247744 0.90052647 -1.81256655 0.07427500 0.201125 0.021700 -0.179425 0.97017545 0.01658469   FALSE
MSTRG.30485.4 ENSG00000156500 No_inf pgwt_inf PABIR3 protein_coding   20.96841 10.3935 49.33974 4.197773 16.41091 2.245974 0.2788248 0.2365458 0.18311165 0.23654581 0.18311165 -0.35242054 0.06407500 0.010350 0.029825 0.019475 0.99284725 0.01658469 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000156500 E001 0.0000000       X 134796395 134796408 14 +      
ENSG00000156500 E002 0.0000000       X 134796409 134796447 39 +      
ENSG00000156500 E003 0.0000000       X 134796448 134796460 13 +      
ENSG00000156500 E004 0.0000000       X 134796789 134796793 5 +      
ENSG00000156500 E005 0.0000000       X 134796794 134796864 71 +      
ENSG00000156500 E006 0.1315150 0.012689553 1.000000000   X 134804101 134804115 15 + 0.000 0.065 9.036
ENSG00000156500 E007 0.7533750 0.016168718 0.800002882 0.93129584 X 134804116 134804246 131 + 0.242 0.215 -0.220
ENSG00000156500 E008 0.1316618 0.012567204 1.000000000   X 134807169 134807190 22 + 0.000 0.065 11.227
ENSG00000156500 E009 0.1316618 0.012567204 1.000000000   X 134807191 134807192 2 + 0.000 0.065 11.227
ENSG00000156500 E010 0.1316618 0.012567204 1.000000000   X 134807193 134807193 1 + 0.000 0.065 11.227
ENSG00000156500 E011 0.3943257 0.016886958 0.446854856   X 134807194 134807216 23 + 0.000 0.171 12.493
ENSG00000156500 E012 0.3943257 0.016886958 0.446854856   X 134807217 134807222 6 + 0.000 0.171 12.493
ENSG00000156500 E013 0.5259875 0.016646151 0.273208217   X 134807223 134807236 14 + 0.000 0.215 12.804
ENSG00000156500 E014 0.5259875 0.016646151 0.273208217   X 134807237 134807238 2 + 0.000 0.215 12.804
ENSG00000156500 E015 0.6228707 0.015229300 0.582993458   X 134807239 134807252 14 + 0.242 0.171 -0.635
ENSG00000156500 E016 0.7540196 0.014680791 0.799021724 0.93090897 X 134807253 134807258 6 + 0.242 0.215 -0.220
ENSG00000156500 E017 0.7540196 0.014680791 0.799021724 0.93090897 X 134807259 134807260 2 + 0.242 0.215 -0.220
ENSG00000156500 E018 0.7540196 0.014680791 0.799021724 0.93090897 X 134807261 134807280 20 + 0.242 0.215 -0.220
ENSG00000156500 E019 1.2609254 0.011508672 0.922161082 0.97794245 X 134807281 134807341 61 + 0.327 0.327 0.002
ENSG00000156500 E020 1.5250477 0.010167658 0.781254983 0.92432746 X 134807342 134807457 116 + 0.327 0.388 0.365
ENSG00000156500 E021 0.8679090 0.012519348 0.420853126 0.72678624 X 134807458 134807539 82 + 0.327 0.215 -0.805
ENSG00000156500 E022 4.9564196 0.056624781 0.086855220 0.33768831 X 134807540 134807708 169 + 0.866 0.671 -0.784
ENSG00000156500 E023 0.0000000       X 134808105 134808180 76 +      
ENSG00000156500 E024 9.0730545 0.002051300 0.682487928 0.87843995 X 134809187 134811183 1997 + 0.965 0.955 -0.036
ENSG00000156500 E025 1.4728684 0.010520128 0.117816674 0.39728234 X 134814771 134814849 79 + 0.511 0.293 -1.220
ENSG00000156500 E026 1.9474046 0.009472780 0.019944421 0.14387410 X 134821327 134822990 1664 + 0.640 0.327 -1.583
ENSG00000156500 E027 0.7540520 0.016617145 0.796751514 0.93009275 X 134829226 134829259 34 + 0.242 0.215 -0.220
ENSG00000156500 E028 1.0007283 0.014726586 0.585388593 0.82990111 X 134829260 134829282 23 + 0.327 0.256 -0.483
ENSG00000156500 E029 0.7536731 0.014927846 0.798013883 0.93051080 X 134831636 134831668 33 + 0.242 0.215 -0.220
ENSG00000156500 E030 0.7026385 0.016771919 0.005403363 0.06126504 X 134831912 134832001 90 + 0.458 0.065 -3.542
ENSG00000156500 E031 2.3124815 0.009425746 0.238581539 0.56423926 X 134832945 134833128 184 + 0.327 0.532 1.102
ENSG00000156500 E032 1.4293268 0.075302508 0.142786272 0.43726288 X 134834074 134834226 153 + 0.138 0.416 2.102
ENSG00000156500 E033 2.6544530 0.005650878 0.995461706 1.00000000 X 134835095 134835674 580 + 0.511 0.532 0.102
ENSG00000156500 E034 1.2770526 0.012956166 0.535774148 0.80236139 X 134835675 134835796 122 + 0.242 0.359 0.780
ENSG00000156500 E035 0.9026747 0.013846505 0.386536939 0.70109164 X 134838727 134839172 446 + 0.138 0.293 1.365
ENSG00000156500 E036 1.4441021 0.636916890 0.173526728 0.48304452 X 134839173 134839477 305 + 0.000 0.442 13.663
ENSG00000156500 E037 0.9811186 0.016359754 0.202230782 0.52137455 X 134839478 134839561 84 + 0.397 0.215 -1.220
ENSG00000156500 E038 0.4909258 0.016993316 0.362584371   X 134839562 134839603 42 + 0.242 0.121 -1.220
ENSG00000156500 E039 0.7534002 0.190848216 0.807824436 0.93456029 X 134844041 134844109 69 + 0.242 0.215 -0.220
ENSG00000156500 E040 1.4093054 0.015577957 0.428721625 0.73244582 X 134844110 134844193 84 + 0.242 0.388 0.950
ENSG00000156500 E041 1.5405633 0.011465773 0.337579736 0.66018458 X 134845205 134845248 44 + 0.242 0.416 1.102
ENSG00000156500 E042 1.6722252 0.009770213 0.264065679 0.59208895 X 134845347 134845401 55 + 0.242 0.442 1.239
ENSG00000156500 E043 0.3768390 0.017635874 0.832316275   X 134847383 134847475 93 + 0.138 0.121 -0.220
ENSG00000156500 E044 0.0000000       X 134847883 134847885 3 +      
ENSG00000156500 E045 0.0000000       X 134847886 134847971 86 +      
ENSG00000156500 E046 0.0000000       X 134849167 134849228 62 +      
ENSG00000156500 E047 1.4271386 0.009415527 0.114507937 0.39094272 X 134852800 134852896 97 + 0.138 0.416 2.102
ENSG00000156500 E048 4.6054858 0.003579032 0.195367224 0.51211063 X 134854091 134854835 745 + 0.558 0.752 0.830

Help

Please Click HERE to learn more details about the results from DEXseq.