ENSG00000158545

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000301011 ENSG00000158545 No_inf pgwt_inf ZC3H18 protein_coding protein_coding 28.78104 32.47963 26.07554 1.05863 0.6035925 -0.3167293 16.676668 15.327848 17.541162 0.9667847 0.2687229 0.1944705 0.59322500 0.475925 0.673350 0.197425 9.105986e-01 4.567237e-05 FALSE TRUE
ENST00000452588 ENSG00000158545 No_inf pgwt_inf ZC3H18 protein_coding protein_coding 28.78104 32.47963 26.07554 1.05863 0.6035925 -0.3167293 3.240123 2.276355 3.299305 0.8185735 0.4829930 0.5334789 0.11629167 0.069000 0.125975 0.056975 9.928472e-01 4.567237e-05 FALSE TRUE
ENST00000565583 ENSG00000158545 No_inf pgwt_inf ZC3H18 protein_coding protein_coding 28.78104 32.47963 26.07554 1.05863 0.6035925 -0.3167293 1.933740 5.801219 0.000000 0.8605215 0.0000000 -9.1826971 0.05896667 0.176900 0.000000 -0.176900 4.567237e-05 4.567237e-05 FALSE FALSE
ENST00000566496 ENSG00000158545 No_inf pgwt_inf ZC3H18 protein_coding retained_intron 28.78104 32.47963 26.07554 1.05863 0.6035925 -0.3167293 3.105205 5.028647 3.412720 0.5045360 0.3123838 -0.5578930 0.10627500 0.154150 0.130325 -0.023825 9.932366e-01 4.567237e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000158545 E001 4.9118829 0.0036103359 0.933262275 0.98143129 16 88570403 88570477 75 + 0.775 0.766 -0.036
ENSG00000158545 E002 9.4692209 0.0015439328 0.142214570 0.43624482 16 88570478 88570566 89 + 1.085 0.953 -0.484
ENSG00000158545 E003 22.0281600 0.0098637022 0.150012899 0.44814397 16 88577110 88577375 266 + 1.416 1.308 -0.373
ENSG00000158545 E004 32.5852688 0.0017148735 0.142127720 0.43610151 16 88577376 88577726 351 + 1.565 1.488 -0.264
ENSG00000158545 E005 8.6261128 0.0063114853 0.730960702 0.90186817 16 88586600 88586616 17 + 0.963 0.998 0.129
ENSG00000158545 E006 13.5255666 0.0011025253 0.237225362 0.56245125 16 88586617 88586684 68 + 1.207 1.117 -0.323
ENSG00000158545 E007 4.8578495 0.0031887299 0.305968014 0.63268231 16 88587542 88587613 72 + 0.826 0.708 -0.472
ENSG00000158545 E008 21.9751742 0.0009387284 0.028978184 0.18028875 16 88598178 88598326 149 + 1.428 1.293 -0.470
ENSG00000158545 E009 13.7886633 0.0010141879 0.324602230 0.64898441 16 88598620 88598712 93 + 1.207 1.133 -0.266
ENSG00000158545 E010 10.0481692 0.0014364373 0.735360494 0.90386881 16 88599791 88599835 45 + 1.057 1.028 -0.107
ENSG00000158545 E011 18.7507963 0.0118337858 0.186861986 0.50087510 16 88599836 88599948 113 + 1.349 1.242 -0.375
ENSG00000158545 E012 0.2620121 0.0161668293 0.251841490   16 88608517 88608933 417 + 0.000 0.171 11.954
ENSG00000158545 E013 20.9659299 0.0031956221 0.704025152 0.88907104 16 88608934 88609051 118 + 1.354 1.329 -0.087
ENSG00000158545 E014 0.0000000       16 88609052 88609264 213 +      
ENSG00000158545 E015 41.1911035 0.0023370392 0.046082984 0.23611247 16 88611268 88611536 269 + 1.673 1.577 -0.327
ENSG00000158545 E016 34.2913282 0.0019790773 0.001631274 0.02602118 16 88622197 88622388 192 + 1.627 1.463 -0.562
ENSG00000158545 E017 0.1315150 0.0123026797 0.553198327   16 88622389 88623218 830 + 0.000 0.094 10.954
ENSG00000158545 E018 24.2606840 0.0019421076 0.011304303 0.10068796 16 88623219 88623344 126 + 1.477 1.324 -0.532
ENSG00000158545 E019 0.0000000       16 88623542 88623957 416 +      
ENSG00000158545 E020 15.9396361 0.0008850647 0.742112991 0.90700611 16 88623958 88624042 85 + 1.240 1.217 -0.081
ENSG00000158545 E021 8.5954982 0.0015615043 0.090929480 0.34632532 16 88624043 88624062 20 + 0.886 1.047 0.601
ENSG00000158545 E022 2.5037219 0.0071103876 0.202651474 0.52174966 16 88624063 88624601 539 + 0.437 0.617 0.857
ENSG00000158545 E023 14.4451613 0.0023823560 0.041022600 0.22183210 16 88624602 88624687 86 + 1.094 1.253 0.570
ENSG00000158545 E024 12.4414647 0.0012677192 0.718844366 0.89679855 16 88624688 88624745 58 + 1.111 1.140 0.107
ENSG00000158545 E025 15.1012092 0.0009827208 0.954264607 0.98881714 16 88625202 88625248 47 + 1.207 1.204 -0.013
ENSG00000158545 E026 12.7797933 0.0021497653 0.951962130 0.98811504 16 88625249 88625267 19 + 1.135 1.140 0.019
ENSG00000158545 E027 11.5113867 0.0061708404 0.014203902 0.11659631 16 88625268 88626699 1432 + 0.963 1.184 0.802
ENSG00000158545 E028 8.9071268 0.0398266744 0.592261309 0.83353085 16 88627062 88627621 560 + 0.951 1.028 0.286
ENSG00000158545 E029 32.0857517 0.0116837010 0.877050733 0.96117083 16 88627622 88627782 161 + 1.512 1.524 0.041
ENSG00000158545 E030 10.9380112 0.0014440353 0.115240021 0.39234360 16 88627920 88627921 2 + 0.997 1.133 0.494
ENSG00000158545 E031 35.1888204 0.0004210913 0.203741943 0.52281742 16 88627922 88628119 198 + 1.522 1.585 0.218
ENSG00000158545 E032 0.5259875 0.0157692172 0.048143286   16 88628648 88628757 110 + 0.000 0.294 12.954
ENSG00000158545 E033 22.4819996 0.0169387264 0.455063972 0.75142872 16 88628758 88628854 97 + 1.334 1.397 0.218
ENSG00000158545 E034 1.5059735 0.0089837813 0.268604072 0.59668078 16 88630155 88630484 330 + 0.299 0.467 0.964
ENSG00000158545 E035 23.1417410 0.0007618881 0.689683033 0.88169810 16 88630485 88630581 97 + 1.368 1.393 0.087
ENSG00000158545 E036 49.3026328 0.0003612858 0.012598555 0.10797658 16 88631101 88631339 239 + 1.640 1.745 0.358
ENSG00000158545 E037 41.8217506 0.0009269801 0.687645727 0.88069959 16 88631340 88631493 154 + 1.620 1.639 0.066
ENSG00000158545 E038 46.4045846 0.0003224568 0.034857565 0.20148614 16 88631494 88631671 178 + 1.622 1.714 0.312
ENSG00000158545 E039 31.2621840 0.0062339420 0.044291131 0.23117088 16 88631672 88631964 293 + 1.436 1.560 0.426

Help

Please Click HERE to learn more details about the results from DEXseq.