ENSG00000160211

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000393562 ENSG00000160211 No_inf pgwt_inf G6PD protein_coding protein_coding 31.45049 22.921 41.22115 1.60929 1.008915 0.8464354 13.4676994 8.340545 17.6231541 2.970159 4.9456360 1.078348 0.42998333 0.387700 0.424325 0.036625 1.00000000 0.01894191 FALSE TRUE
ENST00000393564 ENSG00000160211 No_inf pgwt_inf G6PD protein_coding protein_coding 31.45049 22.921 41.22115 1.60929 1.008915 0.8464354 11.2850188 6.372118 14.7518789 1.686875 3.0341619 1.209769 0.35643333 0.283150 0.362200 0.079050 0.99284725 0.01894191 FALSE TRUE
ENST00000439227 ENSG00000160211 No_inf pgwt_inf G6PD protein_coding protein_coding 31.45049 22.921 41.22115 1.60929 1.008915 0.8464354 1.5401431 0.000000 4.6204292 0.000000 1.5845767 8.855002 0.03702500 0.000000 0.111075 0.111075 0.01894191 0.01894191 FALSE TRUE
ENST00000490651 ENSG00000160211 No_inf pgwt_inf G6PD protein_coding retained_intron 31.45049 22.921 41.22115 1.60929 1.008915 0.8464354 1.0209599 2.046847 0.7192274 1.341399 0.4184533 -1.495994 0.03791667 0.086575 0.016925 -0.069650 0.99284725 0.01894191   FALSE
ENST00000696431 ENSG00000160211 No_inf pgwt_inf G6PD protein_coding protein_coding 31.45049 22.921 41.22115 1.60929 1.008915 0.8464354 0.5897885 1.769366 0.0000000 1.769366 0.0000000 -7.475219 0.02155833 0.064675 0.000000 -0.064675 0.99284725 0.01894191 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000160211 E001 0.0000000       X 154517825 154517829 5 -      
ENSG00000160211 E002 0.0000000       X 154517830 154517839 10 -      
ENSG00000160211 E003 0.8512209 0.0131425672 0.57173143 0.82272977 X 154517840 154518296 457 - 0.225 0.314 0.644
ENSG00000160211 E004 0.1308632 0.0122156357 0.24375119   X 154518297 154518448 152 - 0.000 0.131 12.228
ENSG00000160211 E005 0.3925895 0.5713726650 0.12442584   X 154518449 154518631 183 - 0.000 0.314 12.682
ENSG00000160211 E006 0.0000000       X 154531390 154531390 1 -      
ENSG00000160211 E007 0.2276119 0.2486647189 0.68021975   X 154531391 154531391 1 - 0.127 0.000 -11.881
ENSG00000160211 E008 0.9289514 0.0121517498 0.19842627 0.51615332 X 154531392 154531397 6 - 0.340 0.131 -1.748
ENSG00000160211 E009 66.3285965 0.0002310696 0.53616456 0.80265170 X 154531398 154531999 602 - 1.817 1.796 -0.072
ENSG00000160211 E010 26.0893598 0.0005249745 0.28839181 0.61595524 X 154532000 154532082 83 - 1.436 1.373 -0.217
ENSG00000160211 E011 16.7373700 0.0008494673 0.78421413 0.92519131 X 154532083 154532090 8 - 1.238 1.219 -0.067
ENSG00000160211 E012 0.6053991 0.1258280378 0.74410807   X 154532091 154532187 97 - 0.179 0.232 0.474
ENSG00000160211 E013 35.1352108 0.0004240815 0.16084059 0.46381030 X 154532188 154532280 93 - 1.564 1.492 -0.246
ENSG00000160211 E014 35.6888436 0.0004192205 0.34711048 0.66804579 X 154532386 154532462 77 - 1.528 1.577 0.167
ENSG00000160211 E015 66.5220836 0.0002590379 0.08149528 0.32651007 X 154532567 154532802 236 - 1.787 1.851 0.217
ENSG00000160211 E016 1.0158281 0.0148712722 0.01510390 0.12097248 X 154532803 154532941 139 - 0.127 0.494 2.644
ENSG00000160211 E017 23.2264446 0.0007246027 0.31951380 0.64473580 X 154532942 154533033 92 - 1.388 1.325 -0.217
ENSG00000160211 E018 22.4794498 0.0038126108 0.86991998 0.95885636 X 154533034 154533128 95 - 1.356 1.346 -0.034
ENSG00000160211 E019 1.4893775 0.1064468390 0.11197155 0.38696188 X 154533129 154533316 188 - 0.267 0.541 1.544
ENSG00000160211 E020 1.5065351 0.0089506169 0.01671858 0.12930106 X 154533317 154533491 175 - 0.225 0.583 2.059
ENSG00000160211 E021 0.7543785 0.0142359411 0.09022153 0.34477760 X 154533492 154533568 77 - 0.127 0.383 2.059
ENSG00000160211 E022 0.1145948 0.0111615695 1.00000000   X 154533569 154533575 7 - 0.068 0.000 -11.511
ENSG00000160211 E023 19.2784923 0.0006797317 0.25442981 0.58141606 X 154533576 154533641 66 - 1.315 1.237 -0.276
ENSG00000160211 E024 13.3947995 0.0010160815 0.11246548 0.38778528 X 154533642 154533669 28 - 1.183 1.051 -0.475
ENSG00000160211 E025 0.1141751 0.0111982689 1.00000000   X 154533670 154533807 138 - 0.068 0.000 -11.510
ENSG00000160211 E026 9.8954344 0.0014483328 0.02498400 0.16551864 X 154534035 154534035 1 - 1.086 0.867 -0.816
ENSG00000160211 E027 22.6528313 0.0031684869 0.06822347 0.29598026 X 154534036 154534160 125 - 1.396 1.271 -0.437
ENSG00000160211 E028 0.5074772 0.0158262259 0.08562550   X 154534161 154534193 33 - 0.068 0.314 2.644
ENSG00000160211 E029 28.9547631 0.0005422652 0.07241191 0.30553583 X 154534338 154534496 159 - 1.420 1.521 0.347
ENSG00000160211 E030 1.4562920 0.0278462407 0.52411470 0.79512897 X 154534497 154534499 3 - 0.340 0.442 0.573
ENSG00000160211 E031 0.4910110 0.0176317157 0.47212900   X 154535075 154535167 93 - 0.127 0.232 1.059
ENSG00000160211 E032 17.6328562 0.0011087143 0.69814351 0.88551947 X 154535168 154535241 74 - 1.242 1.271 0.103
ENSG00000160211 E033 31.9020756 0.0051744308 0.74427309 0.90820081 X 154535242 154535385 144 - 1.506 1.487 -0.064
ENSG00000160211 E034 0.0000000       X 154535726 154535936 211 -      
ENSG00000160211 E035 11.8483865 0.0012086203 0.96927199 0.99386280 X 154535937 154535953 17 - 1.092 1.090 -0.007
ENSG00000160211 E036 22.5137628 0.0006639940 0.25977871 0.58718438 X 154535954 154536045 92 - 1.326 1.398 0.251
ENSG00000160211 E037 0.0000000       X 154536137 154536140 4 -      
ENSG00000160211 E038 8.7962118 0.0015999493 0.42071668 0.72664584 X 154536141 154536178 38 - 0.945 1.023 0.290
ENSG00000160211 E039 0.0000000       X 154545751 154546035 285 -      
ENSG00000160211 E040 0.0000000       X 154546036 154546159 124 -      
ENSG00000160211 E041 0.0000000       X 154546160 154546163 4 -      
ENSG00000160211 E042 0.1315150 0.0122345432 0.24378450   X 154546724 154546788 65 - 0.000 0.131 12.228
ENSG00000160211 E043 0.7719504 0.0152573578 0.01114241 0.09974801 X 154546789 154546961 173 - 0.068 0.442 3.381
ENSG00000160211 E044 0.4915776 0.0162519801 0.47141785   X 154547026 154547062 37 - 0.127 0.232 1.059
ENSG00000160211 E045 0.9475903 0.2136011625 0.75537671 0.91289733 X 154547063 154547467 405 - 0.305 0.232 -0.526
ENSG00000160211 E046 0.0000000       X 154547468 154547572 105 -      

Help

Please Click HERE to learn more details about the results from DEXseq.