ENSG00000161202

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000313143 ENSG00000161202 No_inf pgwt_inf DVL3 protein_coding protein_coding 27.2218 30.83782 26.09666 2.3138 2.111985 -0.2407505 17.840871 18.730996 17.958108 0.8360546 1.1602700 -0.06075918 0.6628083 0.61295 0.692050 0.079100 0.9928472467 0.0006842927 FALSE TRUE
ENST00000478247 ENSG00000161202 No_inf pgwt_inf DVL3 protein_coding retained_intron 27.2218 30.83782 26.09666 2.3138 2.111985 -0.2407505 1.186203 0.000000 2.836019 0.0000000 0.4212357 8.15280144 0.0466750 0.00000 0.112850 0.112850 0.0006842927 0.0006842927 FALSE TRUE
MSTRG.21201.7 ENSG00000161202 No_inf pgwt_inf DVL3 protein_coding   27.2218 30.83782 26.09666 2.3138 2.111985 -0.2407505 5.763109 9.391876 2.910090 0.5710534 1.2286857 -1.68693608 0.2111083 0.31075 0.121325 -0.189425 0.9597895681 0.0006842927 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000161202 E001 10.3004248 1.365332e-03 2.621193e-02 1.706327e-01 3 184155377 184155558 182 + 1.149 0.955 -0.708
ENSG00000161202 E002 4.3206774 3.201646e-03 9.091316e-01 9.731702e-01 3 184155559 184155561 3 + 0.715 0.728 0.054
ENSG00000161202 E003 4.6984490 2.988257e-03 8.117828e-01 9.360187e-01 3 184155562 184155564 3 + 0.736 0.764 0.111
ENSG00000161202 E004 4.5844988 3.097809e-03 6.777551e-01 8.759205e-01 3 184155565 184155568 4 + 0.715 0.764 0.199
ENSG00000161202 E005 25.5952611 7.834569e-04 6.890441e-01 8.813191e-01 3 184155569 184155796 228 + 1.434 1.410 -0.083
ENSG00000161202 E006 0.0000000       3 184156360 184156447 88 +      
ENSG00000161202 E007 0.1308632 1.219082e-02 6.135331e-01   3 184156775 184157067 293 + 0.000 0.090 9.962
ENSG00000161202 E008 0.0000000       3 184162605 184162801 197 +      
ENSG00000161202 E009 13.8740476 9.634581e-04 5.439009e-01 8.075832e-01 3 184163657 184163676 20 + 1.195 1.148 -0.168
ENSG00000161202 E010 19.8717277 6.947363e-04 4.373411e-02 2.298633e-01 3 184163677 184163726 50 + 1.386 1.254 -0.460
ENSG00000161202 E011 25.3955411 5.579284e-04 3.005431e-03 4.077340e-02 3 184164267 184164388 122 + 1.507 1.335 -0.597
ENSG00000161202 E012 0.3767001 1.661999e-02 6.691531e-01   3 184164478 184164491 14 + 0.101 0.164 0.806
ENSG00000161202 E013 19.5681093 8.335216e-04 1.430502e-01 4.377427e-01 3 184164492 184164601 110 + 1.362 1.265 -0.338
ENSG00000161202 E014 0.1311489 1.225179e-02 6.134834e-01   3 184164647 184164795 149 + 0.000 0.090 9.961
ENSG00000161202 E015 16.3593865 9.259719e-04 1.049089e-01 3.736209e-01 3 184164796 184164855 60 + 1.298 1.182 -0.409
ENSG00000161202 E016 15.5021129 3.514359e-03 1.404591e-01 4.337883e-01 3 184164856 184164929 74 + 1.274 1.162 -0.398
ENSG00000161202 E017 5.6410940 3.848109e-03 6.599551e-01 8.671875e-01 3 184164930 184164931 2 + 0.846 0.797 -0.194
ENSG00000161202 E018 10.2812391 6.053778e-03 5.656270e-01 8.188126e-01 3 184164932 184165112 181 + 1.018 1.070 0.191
ENSG00000161202 E019 19.8418563 1.999818e-02 3.611581e-01 6.806908e-01 3 184165113 184165206 94 + 1.357 1.281 -0.265
ENSG00000161202 E020 21.5494952 6.493825e-04 8.448159e-01 9.486800e-01 3 184165422 184165491 70 + 1.357 1.344 -0.045
ENSG00000161202 E021 21.2103191 7.312518e-04 9.624799e-01 9.911583e-01 3 184166126 184166193 68 + 1.341 1.344 0.008
ENSG00000161202 E022 28.5035904 5.040178e-04 4.544759e-01 7.509900e-01 3 184166194 184166265 72 + 1.489 1.447 -0.144
ENSG00000161202 E023 28.9637271 5.120444e-04 6.185534e-02 2.799608e-01 3 184166446 184166522 77 + 1.528 1.426 -0.352
ENSG00000161202 E024 0.2454678 1.620900e-02 9.180498e-01   3 184166523 184166605 83 + 0.101 0.090 -0.194
ENSG00000161202 E025 22.5973937 6.036116e-04 4.959286e-03 5.788669e-02 3 184166606 184166673 68 + 1.459 1.286 -0.600
ENSG00000161202 E026 0.1141751 1.117274e-02 4.710658e-01   3 184166674 184166701 28 + 0.101 0.000 -11.173
ENSG00000161202 E027 19.8046388 7.387834e-04 8.298841e-03 8.219259e-02 3 184166826 184166876 51 + 1.404 1.231 -0.604
ENSG00000161202 E028 30.6488947 4.837710e-04 3.338766e-02 1.963245e-01 3 184166877 184166975 99 + 1.557 1.444 -0.389
ENSG00000161202 E029 34.1059859 4.187322e-04 2.669977e-01 5.952115e-01 3 184167580 184167711 132 + 1.573 1.516 -0.194
ENSG00000161202 E030 39.0244913 4.400902e-04 7.355684e-01 9.039093e-01 3 184167898 184168065 168 + 1.608 1.591 -0.057
ENSG00000161202 E031 38.6896328 3.604546e-04 4.826219e-01 7.694295e-01 3 184170006 184170221 216 + 1.576 1.609 0.112
ENSG00000161202 E032 64.2688252 3.170537e-03 3.187721e-01 6.440944e-01 3 184170319 184170729 411 + 1.834 1.792 -0.144
ENSG00000161202 E033 91.3313359 1.858587e-04 5.136626e-01 7.890143e-01 3 184170730 184171566 837 + 1.973 1.952 -0.069
ENSG00000161202 E034 287.9303417 7.281884e-05 1.412537e-19 4.628761e-17 3 184171567 184173614 2048 + 2.372 2.511 0.465

Help

Please Click HERE to learn more details about the results from DEXseq.