ENSG00000161996

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000546923 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding retained_intron 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 1.1726117 1.7125326 1.2958810 0.2892224 0.6179244 -0.3995079 0.07107500 0.072725 0.081875 0.009150 1.000000000 0.001665197 FALSE FALSE
ENST00000547944 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding protein_coding 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 1.1385934 1.8151193 0.7670751 1.8151193 0.7670751 -1.2318648 0.06884167 0.081625 0.051200 -0.030425 1.000000000 0.001665197 FALSE TRUE
ENST00000549091 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding protein_coding 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 0.9551324 1.8551726 0.0000000 0.1620121 0.0000000 -7.5431653 0.05939167 0.077200 0.000000 -0.077200 0.035838535 0.001665197 FALSE TRUE
ENST00000551100 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding protein_coding 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 0.7194471 0.0000000 0.1836738 0.0000000 0.1836738 4.2755569 0.06478333 0.000000 0.014675 0.014675 0.992847247 0.001665197   FALSE
ENST00000552728 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding nonsense_mediated_decay 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 0.4647804 0.2753914 0.9130775 0.1632530 0.3729392 1.6935099 0.03432500 0.009750 0.068950 0.059200 0.946325844 0.001665197 TRUE TRUE
ENST00000553080 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding retained_intron 16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 3.0204458 5.4084015 2.3668308 1.8072133 0.3000824 -1.1888281 0.17605000 0.215425 0.172725 -0.042700 1.000000000 0.001665197 TRUE TRUE
MSTRG.10368.1 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding   16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 0.5499523 0.0000000 1.4878548 0.0000000 0.2105111 7.2267540 0.04013333 0.000000 0.104350 0.104350 0.001665197 0.001665197 FALSE TRUE
MSTRG.10368.15 ENSG00000161996 No_inf pgwt_inf WDR90 protein_coding   16.46663 24.77609 14.37535 3.434613 1.357874 -0.7849304 1.2900762 1.6107598 1.3437928 0.5559489 0.7834119 -0.2596633 0.09112500 0.075600 0.099550 0.023950 1.000000000 0.001665197 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000161996 E001 0.1138060 0.011115526 0.354286837   16 649303 649310 8 + 0.114 0.000 -10.438
ENSG00000161996 E002 0.3415621 0.020253491 0.046595066   16 649311 649324 14 + 0.279 0.000 -14.920
ENSG00000161996 E003 0.3415621 0.020253491 0.046595066   16 649325 649352 28 + 0.279 0.000 -14.920
ENSG00000161996 E004 0.4727110 0.019990238 0.164081980   16 649353 649364 12 + 0.279 0.079 -2.176
ENSG00000161996 E005 1.6024973 0.012964414 0.665154497 0.86988549 16 649365 649426 62 + 0.448 0.380 -0.368
ENSG00000161996 E006 1.2452732 0.177353426 0.979287814 0.99732325 16 649427 649762 336 + 0.343 0.342 -0.005
ENSG00000161996 E007 2.6196359 0.005404222 0.856458964 0.95372505 16 649763 649854 92 + 0.532 0.556 0.110
ENSG00000161996 E008 4.5518014 0.024444768 0.335799877 0.65881734 16 649991 650167 177 + 0.807 0.680 -0.513
ENSG00000161996 E009 2.9631278 0.030695129 0.595366596 0.83526623 16 650254 650362 109 + 0.634 0.556 -0.350
ENSG00000161996 E010 2.5368185 0.121112202 0.293775181 0.62203857 16 650539 650709 171 + 0.398 0.601 0.994
ENSG00000161996 E011 3.9773822 0.010242728 0.947245575 0.98673583 16 650995 651103 109 + 0.691 0.680 -0.043
ENSG00000161996 E012 3.1885309 0.016000692 0.325349381 0.64974408 16 651199 651266 68 + 0.691 0.556 -0.591
ENSG00000161996 E013 3.4687436 0.004230825 0.763130169 0.91588733 16 651644 651747 104 + 0.663 0.622 -0.176
ENSG00000161996 E014 0.4912115 0.015911087 0.688550605   16 651824 651826 3 + 0.204 0.146 -0.591
ENSG00000161996 E015 5.1277444 0.036771527 0.744905987 0.90861234 16 651827 652039 213 + 0.741 0.791 0.203
ENSG00000161996 E016 0.0000000       16 652122 652466 345 +      
ENSG00000161996 E017 2.3729177 0.007487303 0.782306168 0.92478304 16 652467 652535 69 + 0.492 0.531 0.187
ENSG00000161996 E018 3.9937314 0.129440092 0.827643780 0.94198877 16 653341 653451 111 + 0.663 0.698 0.146
ENSG00000161996 E019 0.0000000       16 653452 653470 19 +      
ENSG00000161996 E020 3.4706814 0.161562143 0.701444430 0.88773373 16 653525 653670 146 + 0.663 0.622 -0.176
ENSG00000161996 E021 1.0161705 0.153909466 0.484715570 0.77103080 16 653746 653785 40 + 0.204 0.342 0.994
ENSG00000161996 E022 0.6050148 0.014488346 0.371964825   16 653786 653803 18 + 0.279 0.146 -1.176
ENSG00000161996 E023 2.2594121 0.006753968 0.561837446 0.81701792 16 653804 655028 1225 + 0.448 0.531 0.409
ENSG00000161996 E024 0.0000000       16 655029 655057 29 +      
ENSG00000161996 E025 0.0000000       16 655058 655147 90 +      
ENSG00000161996 E026 0.0000000       16 655148 655306 159 +      
ENSG00000161996 E027 0.2453240 0.016335736 0.752219991   16 655307 655468 162 + 0.114 0.079 -0.591
ENSG00000161996 E028 0.0000000       16 655573 655589 17 +      
ENSG00000161996 E029 0.0000000       16 655590 655703 114 +      
ENSG00000161996 E030 0.0000000       16 655773 655885 113 +      
ENSG00000161996 E031 0.0000000       16 655886 655889 4 +      
ENSG00000161996 E032 0.3761841 0.016775683 0.868410841   16 655890 656274 385 + 0.114 0.146 0.409
ENSG00000161996 E033 0.6215081 0.014455056 1.000000000   16 656275 656301 27 + 0.204 0.204 -0.006
ENSG00000161996 E034 2.3396681 0.006320588 0.520285454 0.79258131 16 656302 656420 119 + 0.569 0.476 -0.439
ENSG00000161996 E035 1.7167265 0.008896792 0.456575065 0.75242119 16 656421 656432 12 + 0.492 0.380 -0.591
ENSG00000161996 E036 4.7659393 0.011924409 0.480421493 0.76795108 16 656433 656537 105 + 0.691 0.777 0.353
ENSG00000161996 E037 4.2422124 0.056634073 0.899781030 0.97013005 16 656732 656814 83 + 0.691 0.715 0.102
ENSG00000161996 E038 3.8481779 0.004108875 0.828691609 0.94223313 16 656815 656871 57 + 0.691 0.662 -0.121
ENSG00000161996 E039 4.6615233 0.003468687 0.219247908 0.54252779 16 657091 657221 131 + 0.827 0.680 -0.591
ENSG00000161996 E040 0.4903592 0.015993219 0.689196940   16 657222 657357 136 + 0.204 0.146 -0.591
ENSG00000161996 E041 3.2430183 0.031555848 0.880225619 0.96208811 16 657762 657857 96 + 0.603 0.622 0.088
ENSG00000161996 E042 3.1280671 0.013984635 0.686764955 0.88044833 16 657858 657892 35 + 0.569 0.622 0.239
ENSG00000161996 E043 7.3508272 0.004886252 0.869629382 0.95873370 16 658183 658344 162 + 0.898 0.913 0.056
ENSG00000161996 E044 3.2235641 0.004398628 0.814139250 0.93664696 16 658525 658559 35 + 0.634 0.601 -0.143
ENSG00000161996 E045 3.6813897 0.003985783 0.272621062 0.60088693 16 658560 658614 55 + 0.741 0.601 -0.591
ENSG00000161996 E046 2.5066799 0.007643470 0.651407418 0.86358700 16 658615 658653 39 + 0.492 0.556 0.302
ENSG00000161996 E047 3.7631585 0.005513882 0.046203802 0.23658682 16 658896 659011 116 + 0.807 0.556 -1.060
ENSG00000161996 E048 0.4567510 0.016422860 0.016312333   16 659012 659085 74 + 0.343 0.000 -15.266
ENSG00000161996 E049 2.6657472 0.009079783 0.078122818 0.31885758 16 659086 659126 41 + 0.691 0.446 -1.121
ENSG00000161996 E050 4.8131144 0.003315202 0.442912430 0.74280832 16 659245 659376 132 + 0.807 0.715 -0.368
ENSG00000161996 E051 3.8478038 0.075687634 0.779021636 0.92341504 16 660058 660161 104 + 0.691 0.662 -0.122
ENSG00000161996 E052 0.1316618 0.012420186 0.815458937   16 660552 660611 60 + 0.000 0.079 11.750
ENSG00000161996 E053 5.7332469 0.046672067 0.967285248 0.99294716 16 660612 660714 103 + 0.807 0.819 0.047
ENSG00000161996 E054 1.0325786 0.067548058 0.109420100 0.38182314 16 660715 660870 156 + 0.114 0.380 2.216
ENSG00000161996 E055 2.2259544 0.008533802 0.711713997 0.89289040 16 661051 661064 14 + 0.532 0.476 -0.269
ENSG00000161996 E056 2.7337200 0.008393432 0.938513285 0.98374504 16 661065 661089 25 + 0.569 0.556 -0.060
ENSG00000161996 E057 5.1691359 0.002891808 0.323932566 0.64821785 16 661090 661172 83 + 0.846 0.731 -0.453
ENSG00000161996 E058 0.1139502 0.011199075 0.354179050   16 661173 661341 169 + 0.114 0.000 -13.536
ENSG00000161996 E059 5.6269037 0.138931289 0.374380987 0.69202929 16 661342 661501 160 + 0.914 0.731 -0.717
ENSG00000161996 E060 0.1315150 0.012303950 0.815571853   16 661588 661596 9 + 0.000 0.079 11.750
ENSG00000161996 E061 5.7761726 0.002720244 0.219926317 0.54335219 16 661597 661731 135 + 0.898 0.763 -0.529
ENSG00000161996 E062 3.9123027 0.022217380 0.168075842 0.47482700 16 661732 661787 56 + 0.786 0.601 -0.771
ENSG00000161996 E063 6.4786162 0.002286316 0.061271752 0.27860148 16 661891 662059 169 + 0.974 0.777 -0.754
ENSG00000161996 E064 2.1723141 0.007546770 0.075446819 0.31239137 16 662220 662242 23 + 0.634 0.380 -1.243
ENSG00000161996 E065 3.2868104 0.004626504 0.107784001 0.37906384 16 662243 662274 32 + 0.741 0.531 -0.913
ENSG00000161996 E066 5.3996737 0.013986674 0.206796914 0.52713056 16 662275 662331 57 + 0.881 0.732 -0.591
ENSG00000161996 E067 4.4340385 0.003370593 0.386560497 0.70109164 16 662332 662672 341 + 0.786 0.680 -0.430
ENSG00000161996 E068 2.7174539 0.006255148 0.608634692 0.84184627 16 662673 662678 6 + 0.603 0.531 -0.328
ENSG00000161996 E069 8.6639566 0.001684837 0.251099060 0.57813314 16 662679 662844 166 + 0.898 1.008 0.409
ENSG00000161996 E070 7.9014597 0.011948059 0.415072245 0.72254162 16 662845 663064 220 + 0.987 0.902 -0.319
ENSG00000161996 E071 4.1076934 0.011863709 0.947586015 0.98673583 16 663065 663139 75 + 0.691 0.698 0.031
ENSG00000161996 E072 1.5415866 0.008645127 0.082397571 0.32814761 16 663140 663144 5 + 0.204 0.476 1.731
ENSG00000161996 E073 8.2690420 0.001715336 0.387215031 0.70171408 16 663145 663539 395 + 0.898 0.981 0.312
ENSG00000161996 E074 1.2968664 0.010051862 0.035640842 0.20443325 16 663540 663553 14 + 0.114 0.446 2.579
ENSG00000161996 E075 8.1430434 0.041145494 0.558088096 0.81517598 16 664988 665183 196 + 0.898 0.972 0.278
ENSG00000161996 E076 2.6848640 0.007527525 0.176977877 0.48829369 16 665184 665257 74 + 0.663 0.476 -0.854
ENSG00000161996 E077 12.2075814 0.018166634 0.174406950 0.48423470 16 665258 665678 421 + 1.013 1.151 0.500
ENSG00000161996 E078 11.7483676 0.001234778 0.026545773 0.17172909 16 665679 665801 123 + 0.960 1.151 0.699
ENSG00000161996 E079 0.3425759 0.015837207 0.045927304   16 665874 665949 76 + 0.279 0.000 -14.924
ENSG00000161996 E080 15.7786187 0.004207902 0.851568748 0.95147286 16 665950 666124 175 + 1.221 1.203 -0.062
ENSG00000161996 E081 0.4915806 0.015983099 0.687607480   16 666125 666219 95 + 0.204 0.146 -0.591
ENSG00000161996 E082 8.8388105 0.038459685 0.948569495 0.98692724 16 666220 666302 83 + 0.974 0.981 0.028
ENSG00000161996 E083 7.8075287 0.006880724 0.659308757 0.86680543 16 666303 666350 48 + 0.960 0.913 -0.176
ENSG00000161996 E084 1.1815186 0.080448185 0.009954826 0.09232121 16 666351 666454 104 + 0.000 0.446 14.457
ENSG00000161996 E085 7.8512063 0.002614495 0.039484977 0.21701355 16 666455 666495 41 + 0.786 0.999 0.814
ENSG00000161996 E086 10.9462279 0.001516199 0.130275604 0.41864345 16 666496 666598 103 + 0.974 1.106 0.484
ENSG00000161996 E087 1.5067566 0.206873616 0.697776854 0.88520246 16 666599 666672 74 + 0.343 0.414 0.409
ENSG00000161996 E088 13.6326086 0.033703220 0.502886199 0.78260806 16 666673 666792 120 + 1.104 1.175 0.253
ENSG00000161996 E089 5.5163009 0.010115959 0.428934906 0.73261602 16 666905 666910 6 + 0.741 0.832 0.360
ENSG00000161996 E090 11.5950893 0.001855043 0.056119407 0.26483730 16 666911 666989 79 + 0.974 1.139 0.602
ENSG00000161996 E091 11.1858624 0.001296417 0.145860655 0.44168380 16 667432 667513 82 + 0.987 1.113 0.458
ENSG00000161996 E092 12.2180226 0.001211340 0.800311215 0.93149474 16 667514 667833 320 + 1.094 1.113 0.068

Help

Please Click HERE to learn more details about the results from DEXseq.