ENSG00000163808

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000326047 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding protein_coding 8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 2.8323988 1.9385564 2.6941969 0.8406832 0.8985277 0.4727945 0.49861667 0.222525 0.690100 0.467575 0.95897066 0.00115181 FALSE TRUE
ENST00000422209 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding nonsense_mediated_decay 8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 2.0439770 3.3392443 0.0000000 1.0124376 0.0000000 -8.3876918 0.23360000 0.404900 0.000000 -0.404900 0.00115181 0.00115181 TRUE TRUE
ENST00000425755 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding protein_coding 8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 0.3608619 1.0825858 0.0000000 0.8025983 0.0000000 -6.7716028 0.05047500 0.151425 0.000000 -0.151425 0.99284725 0.00115181 FALSE TRUE
ENST00000438321 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding nonsense_mediated_decay 8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 0.2406641 0.7219922 0.0000000 0.7219922 0.0000000 -6.1937564 0.03900000 0.117000 0.000000 -0.117000 0.99323661 0.00115181 FALSE TRUE
ENST00000453693 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding nonsense_mediated_decay 8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 0.6367219 0.5388806 0.8164711 0.3135695 0.5180435 0.5904720 0.08541667 0.071375 0.082200 0.010825 1.00000000 0.00115181 FALSE TRUE
MSTRG.20055.6 ENSG00000163808 No_inf pgwt_inf KIF15 protein_coding   8.065481 7.870648 9.023847 0.8488635 5.068038 0.1970262 1.5484764 0.0000000 4.6454291 0.0000000 4.6454291 8.8627703 0.06395833 0.000000 0.191875 0.191875 0.99284725 0.00115181   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000163808 E001 0.0000000       3 44761721 44761784 64 +      
ENSG00000163808 E002 0.3425253 0.464165128 0.2392313253   3 44761785 44761793 9 + 0.246 0.000 -12.223
ENSG00000163808 E003 1.0613492 0.013467899 0.0689902033 0.2976846 3 44761794 44761861 68 + 0.444 0.168 -1.914
ENSG00000163808 E004 0.8329990 0.013610035 0.2097628697 0.5308167 3 44761862 44761884 23 + 0.356 0.168 -1.428
ENSG00000163808 E005 0.8505691 0.013053256 0.6245890170 0.8497818 3 44774395 44774437 43 + 0.305 0.232 -0.521
ENSG00000163808 E006 3.4018067 0.004582418 0.3267457531 0.6511121 3 44775254 44775437 184 + 0.705 0.583 -0.521
ENSG00000163808 E007 1.3420576 0.036854504 0.6698252340 0.8723244 3 44778115 44778134 20 + 0.402 0.338 -0.369
ENSG00000163808 E008 1.6677133 0.010028383 0.0767173920 0.3152352 3 44778135 44778191 57 + 0.549 0.289 -1.428
ENSG00000163808 E009 0.9656586 0.089255345 0.4503607842 0.7480789 3 44780885 44780922 38 + 0.356 0.232 -0.844
ENSG00000163808 E010 1.9462338 0.007169723 0.5024920634 0.7824209 3 44784845 44784942 98 + 0.517 0.424 -0.469
ENSG00000163808 E011 4.2762285 0.265219903 0.4561613355 0.7522237 3 44786395 44786574 180 + 0.766 0.679 -0.354
ENSG00000163808 E012 5.0249665 0.026996250 0.6988387553 0.8859961 3 44794217 44794426 210 + 0.802 0.757 -0.177
ENSG00000163808 E013 3.3549961 0.025575713 0.4900090084 0.7742524 3 44797551 44797676 126 + 0.579 0.679 0.434
ENSG00000163808 E014 3.2181199 0.005403184 0.0187805303 0.1387976 3 44797834 44797956 123 + 0.765 0.461 -1.354
ENSG00000163808 E015 0.0000000       3 44799187 44799212 26 +      
ENSG00000163808 E016 0.0000000       3 44799213 44799291 79 +      
ENSG00000163808 E017 2.7446432 0.006328565 0.0366682880 0.2079450 3 44800314 44800437 124 + 0.705 0.424 -1.299
ENSG00000163808 E018 1.8322836 0.007704361 0.6715986224 0.8731606 3 44801450 44801526 77 + 0.482 0.424 -0.299
ENSG00000163808 E019 4.5597640 0.003024188 0.0256817388 0.1685217 3 44801765 44801974 210 + 0.866 0.609 -1.050
ENSG00000163808 E020 5.2047251 0.002892362 0.5161479475 0.7904680 3 44802814 44802991 178 + 0.746 0.824 0.309
ENSG00000163808 E021 3.5626287 0.146610166 0.9894154096 1.0000000 3 44805027 44805168 142 + 0.658 0.657 -0.007
ENSG00000163808 E022 3.4852946 0.006970426 0.3679682423 0.6865340 3 44805845 44805986 142 + 0.579 0.700 0.522
ENSG00000163808 E023 4.6029589 0.003313866 0.3730379810 0.6908996 3 44810846 44811043 198 + 0.682 0.792 0.446
ENSG00000163808 E024 4.2072944 0.077926759 0.7396691611 0.9059381 3 44812182 44812289 108 + 0.682 0.739 0.235
ENSG00000163808 E025 4.4217203 0.003434619 0.0202950895 0.1453961 3 44813075 44813180 106 + 0.549 0.839 1.216
ENSG00000163808 E026 0.0000000       3 44813181 44813270 90 +      
ENSG00000163808 E027 2.0939537 0.008226750 0.9485803977 0.9869272 3 44814911 44814970 60 + 0.482 0.495 0.064
ENSG00000163808 E028 2.8293902 0.005530889 0.9973055633 1.0000000 3 44814971 44815076 106 + 0.579 0.583 0.019
ENSG00000163808 E029 5.4501020 0.003051098 0.5364012915 0.8028250 3 44826039 44826189 151 + 0.765 0.839 0.290
ENSG00000163808 E030 4.0065515 0.003950435 0.2636774921 0.5919140 3 44826375 44826460 86 + 0.765 0.634 -0.547
ENSG00000163808 E031 0.0000000       3 44826996 44827193 198 +      
ENSG00000163808 E032 2.3063371 0.121150919 0.4358705647 0.7378623 3 44827459 44827498 40 + 0.579 0.461 -0.566
ENSG00000163808 E033 2.6466863 0.005936337 0.1390897368 0.4319327 3 44827499 44827528 30 + 0.659 0.461 -0.914
ENSG00000163808 E034 4.6271182 0.003273642 0.3591498061 0.6789179 3 44828214 44828300 87 + 0.802 0.700 -0.411
ENSG00000163808 E035 0.2457437 0.016377354 0.9456676829   3 44829949 44829970 22 + 0.098 0.092 -0.106
ENSG00000163808 E036 5.2076152 0.004041363 0.5226262054 0.7943247 3 44829971 44830075 105 + 0.746 0.824 0.309
ENSG00000163808 E037 6.7829137 0.012795470 0.0419458541 0.2246280 3 44830896 44831018 123 + 0.746 0.977 0.894
ENSG00000163808 E038 6.8715715 0.003750688 0.7443162606 0.9082008 3 44838275 44838421 147 + 0.909 0.881 -0.106
ENSG00000163808 E039 4.8893975 0.003788897 0.5556653256 0.8139675 3 44840355 44840456 102 + 0.802 0.739 -0.251
ENSG00000163808 E040 6.4786833 0.002842772 0.4656285382 0.7579063 3 44841074 44841238 165 + 0.909 0.839 -0.270
ENSG00000163808 E041 0.0000000       3 44843123 44843124 2 +      
ENSG00000163808 E042 5.4364460 0.010813722 0.7669947388 0.9177038 3 44843125 44843234 110 + 0.784 0.824 0.157
ENSG00000163808 E043 4.9442259 0.046939693 0.8166438315 0.9373327 3 44847985 44848057 73 + 0.746 0.792 0.183
ENSG00000163808 E044 3.5168167 0.012010786 0.2580965804 0.5859598 3 44848521 44848558 38 + 0.726 0.583 -0.609
ENSG00000163808 E045 9.2468149 0.002001319 0.8363448893 0.9454674 3 44851787 44851952 166 + 0.995 1.019 0.086
ENSG00000163808 E046 7.4630391 0.002134182 0.2197989795 0.5431640 3 44852208 44852339 132 + 0.851 0.977 0.479
ENSG00000163808 E047 6.6478122 0.002337099 0.0402641404 0.2195872 3 44852673 44852794 122 + 0.746 0.967 0.853
ENSG00000163808 E048 11.1115372 0.035919351 0.0999158038 0.3645233 3 44852795 44853261 467 + 0.972 1.153 0.657
ENSG00000163808 E049 1.3138402 0.010279678 0.0007425152 0.0142914 3 44873329 44873461 133 + 0.000 0.526 13.552

Help

Please Click HERE to learn more details about the results from DEXseq.