ENSG00000164904

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000433026 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding protein_coding_CDS_not_defined 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.1778188 0.5334563 0.0000000 0.3301088 0.0000000 -5.7640922 0.01805833 0.054175 0.000000 -0.054175 0.992847247 0.002750305 FALSE FALSE
ENST00000458249 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding nonsense_mediated_decay 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.1925326 0.5775977 0.0000000 0.5775977 0.0000000 -5.8767569 0.03668333 0.110050 0.000000 -0.110050 1.000000000 0.002750305 FALSE TRUE
ENST00000485852 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding retained_intron 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 1.1839459 2.9962310 0.0000000 0.4993792 0.0000000 -8.2318121 0.16097500 0.360575 0.000000 -0.360575 0.002750305 0.002750305   FALSE
ENST00000553117 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding protein_coding 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.4440889 0.0000000 0.8329384 0.0000000 0.4908481 6.3973554 0.11546667 0.000000 0.212200 0.212200 0.918569204 0.002750305 FALSE TRUE
ENST00000636190 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding retained_intron 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.5867885 0.9050388 0.6055065 0.1693697 0.2245472 -0.5720589 0.10436667 0.105925 0.137975 0.032050 1.000000000 0.002750305 FALSE TRUE
ENST00000636286 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding protein_coding_CDS_not_defined 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.9590808 0.9092740 1.4888945 0.7046260 0.5158279 0.7053320 0.18914167 0.104800 0.334075 0.229275 0.960663140 0.002750305 TRUE TRUE
ENST00000636743 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding protein_coding 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.1038343 0.0000000 0.3115029 0.0000000 0.3115029 5.0067597 0.01993333 0.000000 0.059800 0.059800 0.992847247 0.002750305 FALSE TRUE
ENST00000637292 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding nonsense_mediated_decay 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.3632478 1.0897435 0.0000000 0.3773258 0.0000000 -6.7810233 0.03860000 0.115800 0.000000 -0.115800 0.514048572 0.002750305 FALSE TRUE
ENST00000637782 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding protein_coding 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.3155902 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.08255000 0.000000 0.000000 0.000000   0.002750305 FALSE TRUE
ENST00000638008 ENSG00000164904 No_inf pgwt_inf ALDH7A1 protein_coding nonsense_mediated_decay 5.520941 8.344117 4.353921 1.081077 0.3018612 -0.9368624 0.2819896 0.0000000 0.3912666 0.0000000 0.3912666 5.3264893 0.07062500 0.000000 0.096275 0.096275 0.992847247 0.002750305 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000164904 E001 0.0000000       5 126531200 126531386 187 -      
ENSG00000164904 E002 0.0000000       5 126540417 126540988 572 -      
ENSG00000164904 E003 1.9023063 0.008184746 0.111360131 0.38557683 5 126541841 126543997 2157 - 0.310 0.548 1.281
ENSG00000164904 E004 0.0000000       5 126543998 126544009 12 -      
ENSG00000164904 E005 0.1145948 0.011480350 0.470392667   5 126544010 126544042 33 - 0.101 0.000 -13.073
ENSG00000164904 E006 0.3769730 0.016937970 0.669183483   5 126544043 126544089 47 - 0.101 0.164 0.822
ENSG00000164904 E007 0.4911481 0.016617668 0.895286655   5 126544090 126544149 60 - 0.182 0.164 -0.178
ENSG00000164904 E008 0.2456901 0.016343780 0.917911786   5 126544150 126544152 3 - 0.101 0.090 -0.178
ENSG00000164904 E009 0.2456901 0.016343780 0.917911786   5 126544153 126544153 1 - 0.101 0.090 -0.178
ENSG00000164904 E010 0.6057501 0.016197821 0.552754816   5 126544154 126544595 442 - 0.251 0.164 -0.763
ENSG00000164904 E011 0.1145948 0.011480350 0.470392667   5 126544596 126544752 157 - 0.101 0.000 -13.073
ENSG00000164904 E012 0.2283502 0.209584167 0.241993548   5 126544753 126544756 4 - 0.182 0.000 -13.872
ENSG00000164904 E013 0.4739622 0.017774082 0.260796087   5 126544757 126544775 19 - 0.251 0.090 -1.763
ENSG00000164904 E014 0.4739622 0.017774082 0.260796087   5 126544776 126544781 6 - 0.251 0.090 -1.763
ENSG00000164904 E015 0.7017184 0.014758165 0.066323207 0.29148388 5 126544782 126544784 3 - 0.362 0.090 -2.500
ENSG00000164904 E016 1.2100723 0.011671136 0.403306770 0.71373615 5 126544785 126544818 34 - 0.409 0.283 -0.763
ENSG00000164904 E017 1.4555375 0.011020143 0.423846332 0.72900448 5 126544819 126544828 10 - 0.451 0.333 -0.664
ENSG00000164904 E018 3.1447685 0.005090241 0.131546817 0.42060358 5 126544829 126544918 90 - 0.489 0.691 0.909
ENSG00000164904 E019 4.8179120 0.003283701 0.008579371 0.08378302 5 126544919 126545019 101 - 0.557 0.872 1.307
ENSG00000164904 E020 3.0666979 0.028239549 0.012004989 0.10466363 5 126546324 126546344 21 - 0.362 0.730 1.747
ENSG00000164904 E021 3.3746292 0.151867110 0.396922416 0.70924714 5 126546345 126546399 55 - 0.557 0.691 0.586
ENSG00000164904 E022 0.0000000       5 126549504 126549891 388 -      
ENSG00000164904 E023 0.0000000       5 126549892 126549928 37 -      
ENSG00000164904 E024 3.1914764 0.004859553 0.732838079 0.90275104 5 126549929 126550002 74 - 0.642 0.601 -0.178
ENSG00000164904 E025 0.0000000       5 126550003 126550148 146 -      
ENSG00000164904 E026 0.0000000       5 126550149 126550195 47 -      
ENSG00000164904 E027 3.0938777 0.005580154 0.784321933 0.92519131 5 126550196 126550262 67 - 0.587 0.626 0.170
ENSG00000164904 E028 2.1291268 0.007136163 0.340665158 0.66263066 5 126550263 126550293 31 - 0.409 0.548 0.696
ENSG00000164904 E029 4.0760057 0.084183460 0.944821863 0.98613089 5 126552021 126552137 117 - 0.691 0.711 0.085
ENSG00000164904 E030 3.9612627 0.017355983 0.732343777 0.90246296 5 126554287 126554387 101 - 0.667 0.711 0.184
ENSG00000164904 E031 1.1119943 0.012697458 0.888627445 0.96556567 5 126554388 126554393 6 - 0.310 0.333 0.144
ENSG00000164904 E032 0.1315150 0.012368561 0.613514344   5 126554394 126555432 1039 - 0.000 0.090 12.256
ENSG00000164904 E033 2.3393190 0.007250500 0.956181782 0.98930820 5 126555931 126555994 64 - 0.524 0.519 -0.026
ENSG00000164904 E034 1.8490378 0.010214988 0.997101959 1.00000000 5 126555995 126556015 21 - 0.451 0.454 0.014
ENSG00000164904 E035 2.0770215 0.050452421 0.619135262 0.84687963 5 126559240 126559295 56 - 0.524 0.454 -0.348
ENSG00000164904 E036 1.9289427 0.010314648 0.207643184 0.52809592 5 126559296 126559325 30 - 0.557 0.377 -0.915
ENSG00000164904 E037 1.1760780 0.011971117 0.031361543 0.18925303 5 126559326 126559334 9 - 0.489 0.164 -2.178
ENSG00000164904 E038 0.1308632 0.012542583 0.613109394   5 126559335 126559352 18 - 0.000 0.090 12.256
ENSG00000164904 E039 1.5525478 0.009462990 0.101957931 0.36799964 5 126561083 126561124 42 - 0.524 0.283 -1.348
ENSG00000164904 E040 0.7191899 0.013740483 0.326782068 0.65113553 5 126561125 126562422 1298 - 0.310 0.164 -1.178
ENSG00000164904 E041 0.0000000       5 126564358 126564375 18 -      
ENSG00000164904 E042 0.0000000       5 126564376 126564457 82 -      
ENSG00000164904 E043 0.3938931 0.020278136 0.131716439   5 126564458 126564592 135 - 0.000 0.228 13.633
ENSG00000164904 E044 0.1315150 0.012368561 0.613514344   5 126567810 126568039 230 - 0.000 0.090 12.256
ENSG00000164904 E045 0.2277562 0.015646353 0.199878080   5 126568040 126568258 219 - 0.182 0.000 -13.922
ENSG00000164904 E046 1.9820564 0.010957899 0.817890857 0.93751042 5 126568259 126568323 65 - 0.451 0.487 0.184
ENSG00000164904 E047 1.3419998 0.009703358 0.603661202 0.83916852 5 126568324 126568356 33 - 0.409 0.333 -0.441
ENSG00000164904 E048 0.0000000       5 126568357 126570781 2425 -      
ENSG00000164904 E049 1.6839342 0.008661283 0.188283746 0.50257935 5 126570782 126570859 78 - 0.524 0.333 -1.026
ENSG00000164904 E050 0.1308632 0.012542583 0.613109394   5 126570860 126571137 278 - 0.000 0.090 12.256
ENSG00000164904 E051 0.8322935 0.015041737 0.189533474 0.50375877 5 126575420 126575435 16 - 0.362 0.164 -1.500
ENSG00000164904 E052 1.3394648 0.012823078 0.610744385 0.84301425 5 126575436 126575464 29 - 0.409 0.333 -0.441
ENSG00000164904 E053 1.3393205 0.034966634 0.624061146 0.84943983 5 126577079 126577081 3 - 0.409 0.333 -0.441
ENSG00000164904 E054 2.9247029 0.062989443 0.558173306 0.81524799 5 126577082 126577211 130 - 0.642 0.548 -0.419
ENSG00000164904 E055 0.0000000       5 126580047 126580090 44 -      
ENSG00000164904 E056 0.0000000       5 126581189 126582104 916 -      
ENSG00000164904 E057 0.0000000       5 126582105 126582149 45 -      
ENSG00000164904 E058 0.0000000       5 126582779 126582850 72 -      
ENSG00000164904 E059 1.2271291 0.011467622 0.836034735 0.94527824 5 126582851 126582952 102 - 0.362 0.333 -0.178
ENSG00000164904 E060 0.3932413 0.034814085 0.133449724   5 126582953 126582974 22 - 0.000 0.228 13.627
ENSG00000164904 E061 0.7357366 0.036213686 0.879605899 0.96192338 5 126583932 126583954 23 - 0.251 0.228 -0.178
ENSG00000164904 E062 1.8316292 0.007963198 0.609919833 0.84263058 5 126583955 126584012 58 - 0.489 0.417 -0.371
ENSG00000164904 E063 0.0000000       5 126584363 126584495 133 -      
ENSG00000164904 E064 0.0000000       5 126586127 126589032 2906 -      
ENSG00000164904 E065 0.0000000       5 126591928 126592663 736 -      
ENSG00000164904 E066 1.7363281 0.008714536 0.774507067 0.92154436 5 126592664 126592729 66 - 0.409 0.454 0.237
ENSG00000164904 E067 1.3928902 0.011268033 0.188713786 0.50309768 5 126593351 126593404 54 - 0.251 0.454 1.237
ENSG00000164904 E068 0.1145948 0.011480350 0.470392667   5 126593405 126593447 43 - 0.101 0.000 -13.073
ENSG00000164904 E069 0.1145948 0.011480350 0.470392667   5 126593448 126594107 660 - 0.101 0.000 -13.073
ENSG00000164904 E070 0.5074772 0.015561126 0.385679646   5 126594108 126594267 160 - 0.101 0.228 1.407
ENSG00000164904 E071 0.4912089 0.016465138 0.895298192   5 126594268 126594439 172 - 0.182 0.164 -0.178
ENSG00000164904 E072 1.8153018 0.008476333 0.301785906 0.62887941 5 126595007 126595362 356 - 0.524 0.377 -0.763

Help

Please Click HERE to learn more details about the results from DEXseq.