ENSG00000165102

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379644 ENSG00000165102 No_inf pgwt_inf HGSNAT protein_coding protein_coding 80.05728 86.8086 77.4584 1.250734 0.6930334 -0.1643963 57.996944 42.86101 66.277533 1.5563229 1.766248 0.628735 0.73475000 0.494300 0.855700 0.361400 0.03712076 0.03712076 FALSE TRUE
ENST00000519705 ENSG00000165102 No_inf pgwt_inf HGSNAT protein_coding retained_intron 80.05728 86.8086 77.4584 1.250734 0.6930334 -0.1643963 4.752522 10.18354 2.463609 0.7614772 0.628845 -2.042966 0.05699167 0.117550 0.031875 -0.085675 0.41574103 0.03712076 FALSE TRUE
MSTRG.27626.5 ENSG00000165102 No_inf pgwt_inf HGSNAT protein_coding   80.05728 86.8086 77.4584 1.250734 0.6930334 -0.1643963 6.659884 13.81590 1.577216 1.4274590 1.577216 -3.122803 0.07976667 0.158875 0.019950 -0.138925 0.13812714 0.03712076 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000165102 E001 7.1115319 0.0019668151 7.551440e-02 3.124191e-01 8 43140464 43140496 33 + 0.982 0.824 -0.600
ENSG00000165102 E002 7.8312374 0.0018695817 5.438736e-02 2.606254e-01 8 43140497 43140503 7 + 1.022 0.857 -0.622
ENSG00000165102 E003 19.7395052 0.0007098642 3.226196e-02 1.921528e-01 8 43140504 43140614 111 + 1.372 1.256 -0.405
ENSG00000165102 E004 29.3316382 0.0004680877 9.124694e-04 1.674364e-02 8 43146948 43147063 116 + 1.555 1.398 -0.539
ENSG00000165102 E005 37.5279231 0.0003586807 3.939721e-06 1.882485e-04 8 43158575 43158711 137 + 1.676 1.476 -0.686
ENSG00000165102 E006 42.3324700 0.0095558989 4.138577e-01 7.214560e-01 8 43158923 43159044 122 + 1.650 1.623 -0.091
ENSG00000165102 E007 33.4827026 0.0029624886 5.772884e-01 8.253463e-01 8 43161438 43161507 70 + 1.540 1.535 -0.018
ENSG00000165102 E008 0.4907789 0.0162238223 9.658744e-01   8 43167944 43168061 118 + 0.166 0.181 0.150
ENSG00000165102 E009 35.4701695 0.0068440336 2.726571e-01 6.008878e-01 8 43169173 43169242 70 + 1.582 1.541 -0.138
ENSG00000165102 E010 45.5888833 0.0003278160 2.610152e-04 6.382430e-03 8 43170585 43170694 110 + 1.732 1.596 -0.463
ENSG00000165102 E011 19.0044673 0.0204368821 4.284206e-01 7.322854e-01 8 43172310 43172317 8 + 1.322 1.280 -0.147
ENSG00000165102 E012 40.3967083 0.0045066478 1.171059e-01 3.959165e-01 8 43172318 43172386 69 + 1.646 1.587 -0.199
ENSG00000165102 E013 37.0174522 0.0073010047 1.965506e-01 5.134250e-01 8 43173713 43173743 31 + 1.605 1.554 -0.173
ENSG00000165102 E014 7.7366086 0.0060436984 1.482580e-04 4.038186e-03 8 43173744 43174232 489 + 0.674 1.101 1.642
ENSG00000165102 E015 38.4457903 0.0003845094 9.708535e-03 9.107392e-02 8 43178074 43178118 45 + 1.643 1.545 -0.337
ENSG00000165102 E016 68.7887360 0.0013069646 1.604747e-04 4.295997e-03 8 43178119 43178234 116 + 1.901 1.780 -0.405
ENSG00000165102 E017 0.7527404 0.0420027759 3.946135e-01 7.075243e-01 8 43180289 43180738 450 + 0.166 0.308 1.150
ENSG00000165102 E018 6.2775257 0.0022334413 2.677760e-06 1.339789e-04 8 43181647 43182144 498 + 0.490 1.054 2.302
ENSG00000165102 E019 46.9562488 0.0012078113 6.732704e-04 1.324240e-02 8 43182145 43182199 55 + 1.742 1.613 -0.438
ENSG00000165102 E020 49.9760063 0.0002791434 4.233187e-01 7.285556e-01 8 43182200 43182260 61 + 1.711 1.703 -0.026
ENSG00000165102 E021 0.2285450 0.0153718980 2.573030e-01   8 43182349 43182415 67 + 0.166 0.000 -9.641
ENSG00000165102 E022 67.1181599 0.0016214812 1.856719e-02 1.378349e-01 8 43191474 43191595 122 + 1.866 1.799 -0.228
ENSG00000165102 E023 69.7951626 0.0005320229 1.657416e-01 4.716968e-01 8 43192304 43192430 127 + 1.862 1.838 -0.082
ENSG00000165102 E024 47.3218241 0.0004028936 8.302066e-01 9.428853e-01 8 43193757 43193843 87 + 1.666 1.701 0.121
ENSG00000165102 E025 7.2928149 0.0019435962 9.307775e-07 5.330232e-05 8 43193844 43194151 308 + 0.551 1.109 2.215
ENSG00000165102 E026 12.1840375 0.0011412687 3.791543e-04 8.485576e-03 8 43195817 43196167 351 + 0.926 1.250 1.173
ENSG00000165102 E027 12.2930074 0.0011253423 1.481515e-06 8.008932e-05 8 43196168 43196429 262 + 0.848 1.286 1.600
ENSG00000165102 E028 7.9189163 0.0070525773 3.194930e-06 1.560313e-04 8 43196430 43196540 111 + 0.604 1.135 2.065
ENSG00000165102 E029 16.8431503 0.0008080732 2.409537e-08 1.929301e-06 8 43196541 43196947 407 + 0.972 1.415 1.580
ENSG00000165102 E030 55.2008577 0.0017687999 6.009696e-03 6.598293e-02 8 43196948 43197025 78 + 1.795 1.701 -0.316
ENSG00000165102 E031 0.8508446 0.0130666157 7.499600e-01 9.103230e-01 8 43197026 43197671 646 + 0.285 0.249 -0.265
ENSG00000165102 E032 57.9262856 0.0002874843 1.584891e-01 4.607355e-01 8 43197672 43197742 71 + 1.785 1.756 -0.099
ENSG00000165102 E033 62.5755945 0.0002314313 8.574211e-01 9.539621e-01 8 43197840 43197952 113 + 1.793 1.813 0.066
ENSG00000165102 E034 1458.2792695 0.0016966149 1.470808e-05 5.955707e-04 8 43199388 43202855 3468 + 3.130 3.195 0.216

Help

Please Click HERE to learn more details about the results from DEXseq.