ENSG00000169764

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000337130 ENSG00000169764 No_inf pgwt_inf UGP2 protein_coding protein_coding 36.77234 38.17838 30.9208 0.3034565 1.722413 -0.3040894 2.7998828 0.8994641 5.035786 0.5193220 0.5918809 2.4719905 0.08231667 0.023425 0.161350 0.137925 3.625628e-01 1.385364e-05 FALSE TRUE
ENST00000394417 ENSG00000169764 No_inf pgwt_inf UGP2 protein_coding protein_coding 36.77234 38.17838 30.9208 0.3034565 1.722413 -0.3040894 24.9762659 24.7481616 18.115079 1.1686092 2.7928421 -0.4499169 0.67088333 0.647775 0.590950 -0.056825 9.970287e-01 1.385364e-05 FALSE TRUE
ENST00000678298 ENSG00000169764 No_inf pgwt_inf UGP2 protein_coding nonsense_mediated_decay 36.77234 38.17838 30.9208 0.3034565 1.722413 -0.3040894 1.1615854 0.0000000 3.484756 0.0000000 3.4847563 8.4490480 0.03478333 0.000000 0.104350 0.104350 9.928472e-01 1.385364e-05 FALSE TRUE
ENST00000679256 ENSG00000169764 No_inf pgwt_inf UGP2 protein_coding nonsense_mediated_decay 36.77234 38.17838 30.9208 0.3034565 1.722413 -0.3040894 0.5882565 0.1288707 1.635899 0.1288707 0.8055751 3.5670617 0.01955000 0.003425 0.055225 0.051800 7.907505e-01 1.385364e-05 FALSE TRUE
MSTRG.16370.27 ENSG00000169764 No_inf pgwt_inf UGP2 protein_coding   36.77234 38.17838 30.9208 0.3034565 1.722413 -0.3040894 3.5190280 8.5588086 0.000000 1.6068390 0.0000000 -9.7429508 0.09149167 0.224600 0.000000 -0.224600 1.385364e-05 1.385364e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000169764 E001 0.0000000       2 63840952 63840953 2 +      
ENSG00000169764 E002 0.0000000       2 63840954 63840968 15 +      
ENSG00000169764 E003 0.0000000       2 63840969 63840970 2 +      
ENSG00000169764 E004 0.0000000       2 63840971 63840992 22 +      
ENSG00000169764 E005 0.0000000       2 63840993 63840993 1 +      
ENSG00000169764 E006 0.0000000       2 63840994 63840997 4 +      
ENSG00000169764 E007 0.0000000       2 63840998 63841003 6 +      
ENSG00000169764 E008 0.0000000       2 63841004 63841007 4 +      
ENSG00000169764 E009 0.0000000       2 63841008 63841009 2 +      
ENSG00000169764 E010 0.1139502 0.0111562449 4.232319e-01   2 63841010 63841018 9 + 0.106 0.000 -11.741
ENSG00000169764 E011 0.2450991 0.0163338161 8.548943e-01   2 63841019 63841026 8 + 0.106 0.085 -0.359
ENSG00000169764 E012 0.2450991 0.0163338161 8.548943e-01   2 63841027 63841035 9 + 0.106 0.085 -0.359
ENSG00000169764 E013 1.2430020 0.0515759284 8.091583e-01 0.9351455749 2 63841036 63841042 7 + 0.324 0.361 0.226
ENSG00000169764 E014 4.2069939 0.0140955148 9.937780e-01 1.0000000000 2 63841043 63841097 55 + 0.713 0.708 -0.018
ENSG00000169764 E015 7.6960344 0.0184687835 7.725692e-01 0.9207332059 2 63841098 63841131 34 + 0.914 0.944 0.111
ENSG00000169764 E016 9.5724684 0.0025627142 3.071942e-01 0.6335543041 2 63841132 63841156 25 + 1.072 0.975 -0.359
ENSG00000169764 E017 13.5668148 0.0010996917 6.409703e-01 0.8578508680 2 63841157 63841225 69 + 1.180 1.138 -0.149
ENSG00000169764 E018 5.6795563 0.0027186060 8.386127e-01 0.9462835130 2 63841226 63841232 7 + 0.834 0.807 -0.107
ENSG00000169764 E019 0.0000000       2 63841851 63841856 6 +      
ENSG00000169764 E020 0.1308632 0.0122706294 6.811318e-01   2 63841857 63841895 39 + 0.000 0.085 12.656
ENSG00000169764 E021 0.1308632 0.0122706294 6.811318e-01   2 63841896 63841901 6 + 0.000 0.085 12.656
ENSG00000169764 E022 1.8417281 0.0074220185 2.499932e-05 0.0009261089 2 63841902 63842058 157 + 0.713 0.085 -4.266
ENSG00000169764 E023 1.0440694 0.0112098884 5.333022e-03 0.0606618343 2 63842059 63842083 25 + 0.508 0.085 -3.359
ENSG00000169764 E024 1.0794900 0.0112732971 1.784917e-01 0.4905471897 2 63842084 63842101 18 + 0.425 0.217 -1.359
ENSG00000169764 E025 0.6228197 0.0182750602 8.531795e-01   2 63842102 63842105 4 + 0.192 0.217 0.226
ENSG00000169764 E026 2.7178102 0.0057794711 9.016837e-01 0.9707711161 2 63842106 63842204 99 + 0.577 0.556 -0.096
ENSG00000169764 E027 0.2283502 0.2731297884 2.248255e-01   2 63842325 63842380 56 + 0.192 0.000 -14.453
ENSG00000169764 E028 0.2277562 0.0152835286 1.716968e-01   2 63842381 63842415 35 + 0.192 0.000 -15.088
ENSG00000169764 E029 0.3417064 0.0221276311 6.609568e-02   2 63842416 63842437 22 + 0.263 0.000 -15.583
ENSG00000169764 E030 0.3417064 0.0221276311 6.609568e-02   2 63842438 63842440 3 + 0.263 0.000 -15.583
ENSG00000169764 E031 0.3417064 0.0221276311 6.609568e-02   2 63842441 63842471 31 + 0.263 0.000 -15.583
ENSG00000169764 E032 1.0958292 0.0230453930 5.024466e-01 0.7824208657 2 63842539 63842599 61 + 0.378 0.271 -0.681
ENSG00000169764 E033 0.1316618 0.0122881603 6.812004e-01   2 63846074 63846174 101 + 0.000 0.085 12.656
ENSG00000169764 E034 0.0000000       2 63854845 63854883 39 +      
ENSG00000169764 E035 0.0000000       2 63854884 63854936 53 +      
ENSG00000169764 E036 0.0000000       2 63855567 63855643 77 +      
ENSG00000169764 E037 0.1315150 0.0123209564 6.811241e-01   2 63855909 63856253 345 + 0.000 0.085 12.656
ENSG00000169764 E038 0.2287699 0.0155484899 1.712674e-01   2 63856254 63856305 52 + 0.192 0.000 -15.087
ENSG00000169764 E039 7.5446980 0.0018587460 9.851420e-01 0.9992587925 2 63856306 63856319 14 + 0.929 0.922 -0.026
ENSG00000169764 E040 6.4316172 0.0022299112 9.901941e-01 1.0000000000 2 63856320 63856329 10 + 0.868 0.862 -0.025
ENSG00000169764 E041 21.8595906 0.0006646633 7.761629e-01 0.9221382199 2 63856330 63856433 104 + 1.365 1.342 -0.081
ENSG00000169764 E042 0.1308632 0.0122706294 6.811318e-01   2 63856764 63856787 24 + 0.000 0.085 12.656
ENSG00000169764 E043 0.1308632 0.0122706294 6.811318e-01   2 63856788 63856882 95 + 0.000 0.085 12.656
ENSG00000169764 E044 0.0000000       2 63856964 63857002 39 +      
ENSG00000169764 E045 0.5875335 0.0152406964 1.055840e-01   2 63857550 63857642 93 + 0.324 0.085 -2.359
ENSG00000169764 E046 0.9486676 0.0273736633 8.325082e-02 0.3297607294 2 63857643 63857716 74 + 0.425 0.156 -1.944
ENSG00000169764 E047 0.4738660 0.0154669005 2.189661e-01   2 63857717 63857718 2 + 0.263 0.085 -1.944
ENSG00000169764 E048 23.4409969 0.0149390854 7.304023e-01 0.9017246384 2 63857829 63857936 108 + 1.400 1.367 -0.115
ENSG00000169764 E049 0.0000000       2 63857937 63857971 35 +      
ENSG00000169764 E050 0.1311489 0.0122688410 6.811818e-01   2 63859180 63859391 212 + 0.000 0.085 12.656
ENSG00000169764 E051 0.0000000       2 63862841 63862928 88 +      
ENSG00000169764 E052 41.6010768 0.0253126144 4.467508e-01 0.7453241462 2 63882466 63882651 186 + 1.659 1.594 -0.222
ENSG00000169764 E053 0.1138060 0.0110946580 4.232865e-01   2 63882652 63882758 107 + 0.106 0.000 -14.181
ENSG00000169764 E054 0.2623781 0.0161406670 3.347627e-01   2 63883060 63883275 216 + 0.000 0.156 13.580
ENSG00000169764 E055 26.5130061 0.0005397892 4.796661e-01 0.7673905589 2 63883960 63884026 67 + 1.458 1.413 -0.157
ENSG00000169764 E056 22.2798238 0.0011244861 9.467386e-01 0.9865805140 2 63884027 63884093 67 + 1.360 1.359 -0.004
ENSG00000169764 E057 0.2284008 0.0154326070 1.714302e-01   2 63884094 63884110 17 + 0.192 0.000 -15.088
ENSG00000169764 E058 30.5080088 0.0096099520 2.409155e-01 0.5670077163 2 63885589 63885677 89 + 1.446 1.518 0.251
ENSG00000169764 E059 27.9333808 0.0031913303 5.065740e-01 0.7846405932 2 63885678 63885770 93 + 1.432 1.467 0.120
ENSG00000169764 E060 12.0878606 0.0013713632 3.266302e-01 0.6510528209 2 63885771 63885788 18 + 1.062 1.138 0.276
ENSG00000169764 E061 33.6937870 0.0005704353 3.218404e-02 0.1917963650 2 63885789 63885886 98 + 1.467 1.572 0.361
ENSG00000169764 E062 49.7014689 0.0003615862 5.340889e-01 0.8011777354 2 63886341 63886479 139 + 1.685 1.705 0.069
ENSG00000169764 E063 25.1010026 0.0005653626 4.786380e-02 0.2413008323 2 63886480 63886538 59 + 1.338 1.451 0.390
ENSG00000169764 E064 65.3931162 0.0026090652 1.478077e-01 0.4444866111 2 63887402 63887644 243 + 1.850 1.788 -0.212
ENSG00000169764 E065 10.8638294 0.0026444487 4.745398e-03 0.0561556373 2 63887645 63890080 2436 + 0.899 1.152 0.928
ENSG00000169764 E066 29.9797846 0.0004798754 5.344226e-01 0.8012641060 2 63890081 63890185 105 + 1.506 1.467 -0.133
ENSG00000169764 E067 19.5858663 0.0007498468 4.416242e-01 0.7417129921 2 63891120 63891154 35 + 1.338 1.282 -0.195
ENSG00000169764 E068 74.7912282 0.0033285763 3.991196e-01 0.7111340033 2 63891155 63891562 408 + 1.855 1.882 0.090

Help

Please Click HERE to learn more details about the results from DEXseq.