ENSG00000188001

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000425670 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding protein_coding 20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 2.9036259 2.166999 2.069446 1.3424010 0.7689599 -0.066141409 0.13568333 0.107450 0.104000 -0.003450 0.992847247 0.002179691 FALSE TRUE
ENST00000464152 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding protein_coding_CDS_not_defined 20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 3.0352667 3.413534 1.386949 1.2257035 0.8007571 -1.293207296 0.14304167 0.165750 0.076075 -0.089675 0.992847247 0.002179691   FALSE
ENST00000488841 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding protein_coding_CDS_not_defined 20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 0.4012553 0.000000 1.203766 0.0000000 0.7275833 6.923346275 0.02048333 0.000000 0.061450 0.061450 0.971948178 0.002179691   FALSE
MSTRG.21278.1 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding   20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 3.5947710 4.157385 4.133195 0.5019988 1.1555077 -0.008398999 0.18287500 0.228550 0.213300 -0.015250 1.000000000 0.002179691 TRUE TRUE
MSTRG.21278.2 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding   20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 1.4296023 1.117710 1.284048 1.1177099 1.2840479 0.198495038 0.06623333 0.052150 0.057100 0.004950 1.000000000 0.002179691 TRUE TRUE
MSTRG.21278.25 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding   20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 0.9280054 0.000000 2.394559 0.0000000 0.2923165 7.909628773 0.04487500 0.000000 0.119025 0.119025 0.002179691 0.002179691 FALSE FALSE
MSTRG.21278.8 ENSG00000188001 No_inf pgwt_inf TPRG1 protein_coding   20.57231 18.94936 20.10027 1.617558 1.101317 0.08502215 2.0237569 2.544736 1.285775 0.8561633 0.3131294 -0.979358832 0.09734167 0.128825 0.064500 -0.064325 0.992847247 0.002179691 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000188001 E001 0.9985499 0.0123768412 4.640765e-01 0.7569816146 3 188947139 188947176 38 + 0.237 0.349 0.764
ENSG00000188001 E002 1.1127250 0.0112363161 7.186124e-01 0.8966777274 3 188947177 188947213 37 + 0.295 0.349 0.349
ENSG00000188001 E003 0.4907820 0.0163962438 9.834577e-01   3 188947214 188947425 212 + 0.172 0.174 0.027
ENSG00000188001 E004 0.2626639 0.0165725674 2.352053e-01   3 188976754 188976870 117 + 0.000 0.174 12.496
ENSG00000188001 E005 0.2620121 0.0165711509 2.350332e-01   3 189000774 189000786 13 + 0.000 0.174 12.496
ENSG00000188001 E006 3.3538541 0.1165677087 4.003038e-01 0.7117680750 3 189000787 189000911 125 + 0.564 0.695 0.568
ENSG00000188001 E007 3.1081849 0.1140076110 3.457946e-01 0.6670409884 3 189004543 189004590 48 + 0.535 0.673 0.613
ENSG00000188001 E008 8.2637575 0.0018739749 4.827912e-01 0.7696070950 3 189004591 189004760 170 + 0.930 0.995 0.243
ENSG00000188001 E009 5.6452811 0.0025393710 9.453953e-01 0.9862592016 3 189023750 189023946 197 + 0.818 0.825 0.027
ENSG00000188001 E010 0.4570901 0.0698196848 5.307723e-02   3 189033303 189033306 4 + 0.295 0.000 -13.768
ENSG00000188001 E011 1.7818132 0.0502126566 9.528722e-02 0.3550513967 3 189033307 189033359 53 + 0.564 0.299 -1.433
ENSG00000188001 E012 0.2283502 0.2310205455 2.995333e-01   3 189088696 189088729 34 + 0.172 0.000 -12.761
ENSG00000188001 E013 1.1643792 0.1116317817 2.557567e-02 0.1680339613 3 189093012 189093239 228 + 0.094 0.474 3.027
ENSG00000188001 E014 3.1642880 0.0095905812 2.534487e-02 0.1671608367 3 189099953 189100080 128 + 0.431 0.736 1.390
ENSG00000188001 E015 2.4268611 0.0237469630 1.158058e-02 0.1022162223 3 189100081 189100120 40 + 0.295 0.673 1.934
ENSG00000188001 E016 2.6876251 0.0799219124 1.289661e-02 0.1093482232 3 189100121 189100204 84 + 0.294 0.716 2.114
ENSG00000188001 E017 0.0000000       3 189120247 189120387 141 +      
ENSG00000188001 E018 0.0000000       3 189121286 189121371 86 +      
ENSG00000188001 E019 1.7185611 0.0106953895 9.707021e-01 0.9945110136 3 189121662 189121861 200 + 0.431 0.436 0.027
ENSG00000188001 E020 1.1130857 0.0111699876 7.175994e-01 0.8960455548 3 189123579 189123700 122 + 0.295 0.349 0.349
ENSG00000188001 E021 1.6387607 0.0181065953 1.595420e-01 0.4622959782 3 189127057 189127057 1 + 0.295 0.508 1.197
ENSG00000188001 E022 5.4466959 0.0049542488 3.338368e-01 0.6571515349 3 189127058 189127210 153 + 0.749 0.856 0.423
ENSG00000188001 E023 0.6580154 0.0964041958 2.689825e-02 0.1730602828 3 189129244 189129389 146 + 0.000 0.349 13.534
ENSG00000188001 E024 1.3592917 0.0103026204 7.397845e-01 0.9060153046 3 189129893 189129974 82 + 0.345 0.395 0.290
ENSG00000188001 E025 8.2835495 0.0017184408 3.425728e-01 0.6641330732 3 189132399 189132563 165 + 0.918 1.006 0.329
ENSG00000188001 E026 7.0690860 0.0487819369 5.668376e-01 0.8194108061 3 189132564 189132684 121 + 0.943 0.871 -0.273
ENSG00000188001 E027 3.3231568 0.0050011677 8.084504e-01 0.9348457383 3 189132685 189132697 13 + 0.618 0.649 0.134
ENSG00000188001 E028 2.5867504 0.0056612355 7.927189e-01 0.9285586415 3 189147584 189147647 64 + 0.535 0.570 0.164
ENSG00000188001 E029 1.0963098 0.0107611138 7.634739e-01 0.9160306491 3 189150105 189150225 121 + 0.345 0.299 -0.295
ENSG00000188001 E030 0.1145948 0.0112302403 5.489389e-01   3 189150654 189150655 2 + 0.094 0.000 -12.125
ENSG00000188001 E031 4.2603520 0.0037133245 7.489903e-02 0.3110937960 3 189150656 189150805 150 + 0.592 0.809 0.901
ENSG00000188001 E032 3.0949380 0.0046769262 5.176299e-01 0.7911799784 3 189150806 189150872 67 + 0.564 0.649 0.375
ENSG00000188001 E033 1.8161595 0.0076682125 4.632316e-01 0.7565032565 3 189150873 189150903 31 + 0.503 0.395 -0.558
ENSG00000188001 E034 4.1747111 0.0036071698 9.550740e-01 0.9889416250 3 189150904 189151136 233 + 0.710 0.716 0.027
ENSG00000188001 E035 0.0000000       3 189171971 189172131 161 +      
ENSG00000188001 E036 0.1139502 0.0112014449 5.488820e-01   3 189207374 189207375 2 + 0.094 0.000 -12.125
ENSG00000188001 E037 5.4081481 0.0031946176 1.762653e-02 0.1339807720 3 189207376 189207594 219 + 0.643 0.912 1.078
ENSG00000188001 E038 0.5067646 0.5193745581 5.643765e-01   3 189211635 189212212 578 + 0.094 0.241 1.610
ENSG00000188001 E039 1.9984038 0.0073813126 3.006371e-01 0.6279164198 3 189215292 189215299 8 + 0.390 0.540 0.764
ENSG00000188001 E040 2.3578972 0.0076885498 4.687749e-01 0.7602730364 3 189215300 189215383 84 + 0.468 0.570 0.486
ENSG00000188001 E041 1.0154846 0.4179916855 2.963278e-01 0.6242613610 3 189217877 189217895 19 + 0.172 0.395 1.611
ENSG00000188001 E042 1.4877657 0.3673232091 7.089191e-01 0.8915609547 3 189217896 189218003 108 + 0.345 0.436 0.512
ENSG00000188001 E043 0.6402966 0.0152488949 1.661479e-01 0.4721378829 3 189219568 189219665 98 + 0.094 0.299 2.027
ENSG00000188001 E044 0.0000000       3 189238733 189238909 177 +      
ENSG00000188001 E045 0.0000000       3 189267596 189267724 129 +      
ENSG00000188001 E046 1.2537448 0.0618560989 5.492617e-04 0.0113103584 3 189308233 189308334 102 + 0.564 0.000 -14.852
ENSG00000188001 E047 0.8676233 0.0132596406 6.879242e-01 0.8808851309 3 189309894 189310177 284 + 0.237 0.299 0.442
ENSG00000188001 E048 10.8323872 0.0029408157 4.562711e-05 0.0015467181 3 189310386 189310539 154 + 1.224 0.871 -1.295
ENSG00000188001 E049 0.6392805 0.0150889094 1.658519e-01   3 189313071 189313192 122 + 0.094 0.299 2.027
ENSG00000188001 E050 1.1127211 0.3319349069 8.856461e-01 0.9643311128 3 189315493 189315693 201 + 0.294 0.349 0.350
ENSG00000188001 E051 59.0651061 0.0002895685 2.272460e-05 0.0008567883 3 189320626 189325304 4679 + 1.844 1.709 -0.458

Help

Please Click HERE to learn more details about the results from DEXseq.