ENSG00000197142

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356116 ENSG00000197142 No_inf pgwt_inf ACSL5 protein_coding protein_coding 17.93082 7.510925 24.72615 0.2263318 1.565659 1.717639 11.7042290 3.3781034 17.3463487 1.1575980 1.0903901 2.356914 0.62074167 0.46275 0.715025 0.252275 0.9928472 0.0144926 FALSE TRUE
ENST00000433418 ENSG00000197142 No_inf pgwt_inf ACSL5 protein_coding protein_coding 17.93082 7.510925 24.72615 0.2263318 1.565659 1.717639 0.3482925 0.6116585 0.1867041 0.6116585 0.1867041 -1.660095 0.03234167 0.07615 0.008525 -0.067625 0.9928472 0.0144926 FALSE TRUE
ENST00000496328 ENSG00000197142 No_inf pgwt_inf ACSL5 protein_coding retained_intron 17.93082 7.510925 24.72615 0.2263318 1.565659 1.717639 2.2447416 0.0000000 4.9437787 0.0000000 1.8906895 8.952386 0.08805833 0.00000 0.190025 0.190025 0.4515511 0.0144926 FALSE TRUE
MSTRG.4007.6 ENSG00000197142 No_inf pgwt_inf ACSL5 protein_coding   17.93082 7.510925 24.72615 0.2263318 1.565659 1.717639 1.6814572 3.3763773 0.3762451 0.8219325 0.3762451 -3.132154 0.17365000 0.44215 0.014125 -0.428025 0.0144926 0.0144926 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000197142 E001 0.0000000       10 112374116 112374269 154 +      
ENSG00000197142 E002 0.4748017 0.0196620121 1.000000e+00   10 112375235 112375542 308 + 0.156 0.151 -0.061
ENSG00000197142 E003 0.1315150 0.0123083946 1.598346e-01   10 112376198 112376204 7 + 0.000 0.151 9.648
ENSG00000197142 E004 0.2453209 0.0158415045 4.056660e-01   10 112376205 112376220 16 + 0.059 0.151 1.524
ENSG00000197142 E005 10.8536939 0.0017170724 1.216314e-02 0.1056607065 10 112376221 112376448 228 + 1.094 0.833 -0.972
ENSG00000197142 E006 12.7300607 0.0013316625 9.851643e-03 0.0918321919 10 112394918 112395102 185 + 1.155 0.906 -0.912
ENSG00000197142 E007 7.7350287 0.0152565379 1.753393e-01 0.4857847034 10 112398901 112399009 109 + 0.944 0.777 -0.646
ENSG00000197142 E008 6.0672291 0.0651458084 1.483503e-01 0.4453705031 10 112404511 112404575 65 + 0.866 0.636 -0.935
ENSG00000197142 E009 6.8060268 0.0022083963 2.225520e-01 0.5465610521 10 112404705 112404806 102 + 0.891 0.746 -0.571
ENSG00000197142 E010 0.0000000       10 112408422 112408521 100 +      
ENSG00000197142 E011 0.0000000       10 112409507 112409532 26 +      
ENSG00000197142 E012 1.6518195 0.0220135758 7.155737e-01 0.8945893496 10 112409533 112409685 153 + 0.413 0.351 -0.350
ENSG00000197142 E013 4.6104435 0.0361481780 7.563495e-01 0.9133867672 10 112410463 112410495 33 + 0.727 0.675 -0.213
ENSG00000197142 E014 7.2550136 0.0020191009 7.033657e-01 0.8888324761 10 112410584 112410635 52 + 0.866 0.906 0.152
ENSG00000197142 E015 0.5878192 0.0154285043 8.162654e-01   10 112411383 112411455 73 + 0.198 0.151 -0.476
ENSG00000197142 E016 8.3779356 0.0028817613 5.340926e-01 0.8011777354 10 112411456 112411529 74 + 0.951 0.883 -0.257
ENSG00000197142 E017 5.9550950 0.0037454778 8.579684e-02 0.3352880203 10 112411902 112411979 78 + 0.858 0.636 -0.902
ENSG00000197142 E018 11.2995846 0.0116910786 2.966416e-01 0.6244825858 10 112413173 112413307 135 + 1.078 0.969 -0.402
ENSG00000197142 E019 14.5351687 0.0011284328 3.174730e-02 0.1905122062 10 112416888 112417022 135 + 1.197 1.006 -0.689
ENSG00000197142 E020 12.9946748 0.0013627224 6.085849e-01 0.8418462674 10 112417846 112417941 96 + 1.118 1.072 -0.168
ENSG00000197142 E021 14.6466057 0.0011453647 5.409593e-01 0.8054910237 10 112421593 112421665 73 + 1.168 1.115 -0.188
ENSG00000197142 E022 13.6224736 0.0011146932 8.985263e-01 0.9696496392 10 112421947 112421980 34 + 1.128 1.115 -0.044
ENSG00000197142 E023 17.1730091 0.0008100310 2.530144e-01 0.5800887040 10 112421981 112422035 55 + 1.193 1.275 0.292
ENSG00000197142 E024 14.6741959 0.0012743593 2.703819e-01 0.5983000429 10 112422325 112422441 117 + 1.128 1.214 0.307
ENSG00000197142 E025 0.0000000       10 112425338 112425481 144 +      
ENSG00000197142 E026 10.0692419 0.0014261243 1.179703e-01 0.3975479431 10 112426258 112426359 102 + 0.958 1.101 0.524
ENSG00000197142 E027 1.2898611 0.0341716366 5.649452e-01 0.8185319748 10 112426360 112426608 249 + 0.362 0.263 -0.646
ENSG00000197142 E028 13.0426981 0.0012025684 1.314426e-01 0.4204484942 10 112426788 112426859 72 + 1.068 1.191 0.444
ENSG00000197142 E029 63.9783056 0.0003897947 2.124195e-05 0.0008077723 10 112427218 112428379 1162 + 1.722 1.870 0.500

Help

Please Click HERE to learn more details about the results from DEXseq.