ENSG00000197535

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356338 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding protein_coding 20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 3.0257047 1.4179935 2.0212761 0.8229709 1.1843465 0.5083969 0.13979167 0.095550 0.100025 0.004475 1.000000000 0.002586169 FALSE TRUE
ENST00000399229 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding protein_coding 20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 1.2691587 0.3471413 2.1801635 0.3471413 1.2611646 2.6164716 0.05623333 0.022750 0.096350 0.073600 0.992847247 0.002586169 FALSE TRUE
ENST00000686603 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding retained_intron 20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 1.0799015 2.2226884 0.0000000 0.5231527 0.0000000 -7.8026381 0.06302500 0.147000 0.000000 -0.147000 0.002586169 0.002586169 FALSE TRUE
ENST00000688798 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding nonsense_mediated_decay 20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 2.2353695 1.0655816 2.9409376 0.7528140 0.5673234 1.4560564 0.10398333 0.070125 0.138475 0.068350 0.975956156 0.002586169 FALSE TRUE
ENST00000690802 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding protein_coding_CDS_not_defined 20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 0.6101212 1.2505710 0.5797925 0.7362780 0.3374278 -1.0957981 0.03585833 0.081525 0.026050 -0.055475 0.993236612 0.002586169 FALSE TRUE
MSTRG.9643.18 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding   20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 3.9659966 0.9347405 4.4657790 0.6040992 0.5965486 2.2441488 0.17675833 0.063775 0.208400 0.144625 0.814578503 0.002586169 FALSE TRUE
MSTRG.9643.5 ENSG00000197535 No_inf pgwt_inf MYO5A protein_coding   20.72908 15.40964 21.57241 0.5088566 0.8919615 0.4850862 1.1822215 1.4549858 1.6300764 1.0048455 0.9907998 0.1628763 0.05947500 0.088875 0.072325 -0.016550 1.000000000 0.002586169 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000197535 E001 0.0000000       15 52307281 52307282 2 -      
ENSG00000197535 E002 0.0000000       15 52307283 52307285 3 -      
ENSG00000197535 E003 0.0000000       15 52307286 52307286 1 -      
ENSG00000197535 E004 0.3772587 0.0167273075 4.257973e-01   15 52307287 52307295 9 - 0.084 0.194 1.405
ENSG00000197535 E005 0.9838002 0.0684831302 7.064401e-01 8.904050e-01 15 52307296 52307313 18 - 0.267 0.328 0.405
ENSG00000197535 E006 15.3920644 0.0009121195 2.686415e-06 1.341590e-04 15 52307314 52307582 269 - 1.015 1.367 1.250
ENSG00000197535 E007 175.4716770 0.0001008097 2.735780e-25 1.210264e-22 15 52307583 52312664 5082 - 2.132 2.348 0.722
ENSG00000197535 E008 11.7111265 0.0012417521 5.885452e-01 8.318294e-01 15 52312665 52313108 444 - 1.081 1.127 0.164
ENSG00000197535 E009 2.1302235 0.0096154247 7.855814e-02 3.197131e-01 15 52313109 52313109 1 - 0.357 0.613 1.280
ENSG00000197535 E010 2.1480794 0.0190318415 2.752061e-02 1.752801e-01 15 52313110 52313110 1 - 0.315 0.642 1.669
ENSG00000197535 E011 2.3939163 0.0353048104 4.016519e-02 2.192053e-01 15 52313111 52313125 15 - 0.357 0.669 1.521
ENSG00000197535 E012 2.2793215 0.0407207198 2.200119e-02 1.528537e-01 15 52313126 52313128 3 - 0.315 0.669 1.784
ENSG00000197535 E013 3.2275032 0.0432955869 1.925253e-01 5.078964e-01 15 52313129 52313162 34 - 0.524 0.718 0.853
ENSG00000197535 E014 2.8330945 0.0054092471 3.877599e-01 7.021634e-01 15 52313163 52313170 8 - 0.524 0.642 0.531
ENSG00000197535 E015 2.4571931 0.0192255419 5.577790e-01 8.151033e-01 15 52313171 52313173 3 - 0.495 0.582 0.406
ENSG00000197535 E016 2.3425982 0.0209189191 4.302605e-01 7.334241e-01 15 52313174 52313174 1 - 0.465 0.582 0.558
ENSG00000197535 E017 2.4567733 0.0281342673 5.678007e-01 8.198159e-01 15 52313175 52313178 4 - 0.495 0.582 0.406
ENSG00000197535 E018 2.3252584 0.0127497843 7.163900e-01 8.950617e-01 15 52313179 52313180 2 - 0.495 0.549 0.254
ENSG00000197535 E019 4.0244880 0.0034334565 7.863065e-01 9.259098e-01 15 52313181 52313194 14 - 0.684 0.718 0.142
ENSG00000197535 E020 4.7429512 0.0030052468 9.497980e-01 9.872721e-01 15 52313195 52313212 18 - 0.754 0.763 0.034
ENSG00000197535 E021 6.7566632 0.0090229658 2.708221e-01 5.988347e-01 15 52313213 52313260 48 - 0.829 0.949 0.458
ENSG00000197535 E022 6.6598865 0.0667026615 2.473903e-01 5.741185e-01 15 52313261 52313281 21 - 0.801 0.962 0.620
ENSG00000197535 E023 43.6160556 0.0022318802 9.550126e-01 9.889416e-01 15 52313282 52313675 394 - 1.649 1.647 -0.007
ENSG00000197535 E024 9.5317284 0.0014554537 3.599220e-01 6.794869e-01 15 52313676 52313695 20 - 1.058 0.976 -0.302
ENSG00000197535 E025 25.6215685 0.0005681122 2.442948e-01 5.704977e-01 15 52313696 52313848 153 - 1.454 1.387 -0.231
ENSG00000197535 E026 14.5861070 0.0009443639 9.556487e-01 9.891384e-01 15 52314123 52314203 81 - 1.189 1.195 0.018
ENSG00000197535 E027 0.3763283 0.0168555307 4.257371e-01   15 52314204 52315323 1120 - 0.084 0.194 1.405
ENSG00000197535 E028 25.3241826 0.0005613532 7.387876e-01 9.055629e-01 15 52317048 52317222 175 - 1.410 1.430 0.071
ENSG00000197535 E029 0.2456120 0.0166508739 8.292028e-01   15 52317223 52318362 1140 - 0.084 0.108 0.406
ENSG00000197535 E030 33.5542419 0.0004437746 4.386937e-01 7.399490e-01 15 52319060 52319342 283 - 1.555 1.516 -0.132
ENSG00000197535 E031 0.0000000       15 52319343 52321358 2016 -      
ENSG00000197535 E032 16.2647701 0.0370071735 9.810499e-01 9.980234e-01 15 52321359 52321509 151 - 1.240 1.232 -0.028
ENSG00000197535 E033 0.0000000       15 52321510 52321818 309 -      
ENSG00000197535 E034 11.3164577 0.0033319228 8.516992e-01 9.515274e-01 15 52323355 52323444 90 - 1.081 1.099 0.063
ENSG00000197535 E035 0.1315150 0.0122641971 4.055300e-01   15 52323445 52323576 132 - 0.000 0.108 11.936
ENSG00000197535 E036 0.0000000       15 52323577 52323937 361 -      
ENSG00000197535 E037 18.7808809 0.0121088048 1.655019e-01 4.712925e-01 15 52327852 52328006 155 - 1.344 1.232 -0.391
ENSG00000197535 E038 20.6629460 0.0035101895 3.297317e-01 6.536760e-01 15 52330353 52330499 147 - 1.364 1.298 -0.229
ENSG00000197535 E039 2.0689660 0.0402703694 5.611300e-04 1.149669e-02 15 52330500 52331698 1199 - 0.154 0.694 3.213
ENSG00000197535 E040 0.3768390 0.0166896824 4.255228e-01   15 52331699 52331836 138 - 0.084 0.194 1.405
ENSG00000197535 E041 13.5056079 0.0009939888 2.324649e-01 5.580588e-01 15 52336463 52336556 94 - 1.201 1.108 -0.331
ENSG00000197535 E042 3.0132977 0.0048055951 2.155408e-02 1.509724e-01 15 52336557 52337809 1253 - 0.432 0.741 1.405
ENSG00000197535 E043 7.0677093 0.0020125024 7.891804e-01 9.270320e-01 15 52337810 52337884 75 - 0.893 0.920 0.106
ENSG00000197535 E044 0.6037991 0.0203017482 8.918175e-01   15 52337885 52340195 2311 - 0.214 0.194 -0.179
ENSG00000197535 E045 19.0843991 0.0007283029 2.550653e-01 5.820571e-01 15 52340196 52340394 199 - 1.335 1.260 -0.264
ENSG00000197535 E046 1.1810137 0.0112957170 2.506047e-04 6.159075e-03 15 52340395 52340704 310 - 0.000 0.548 14.814
ENSG00000197535 E047 5.7228937 0.0572347646 1.354356e-01 4.265064e-01 15 52343117 52343197 81 - 0.916 0.694 -0.875
ENSG00000197535 E048 9.7786763 0.0014268529 3.826889e-01 6.988059e-01 15 52346361 52346461 101 - 1.066 0.988 -0.284
ENSG00000197535 E049 0.4906986 0.0912293286 7.963347e-01   15 52346462 52346650 189 - 0.154 0.194 0.405
ENSG00000197535 E050 3.5696757 0.0142810570 3.722699e-01 6.902968e-01 15 52346651 52348717 2067 - 0.600 0.718 0.505
ENSG00000197535 E051 0.0000000       15 52348718 52348817 100 -      
ENSG00000197535 E052 4.2609781 0.0165121597 3.361232e-02 1.969257e-01 15 52348818 52348826 9 - 0.829 0.548 -1.179
ENSG00000197535 E053 2.0771652 0.0073802569 7.432846e-01 9.075909e-01 15 52348827 52350529 1703 - 0.465 0.512 0.236
ENSG00000197535 E054 18.2756822 0.0013647729 2.931740e-05 1.063803e-03 15 52351254 52351481 228 - 1.399 1.099 -1.057
ENSG00000197535 E055 9.3642008 0.0014673094 1.298905e-01 4.181951e-01 15 52353605 52353658 54 - 1.074 0.935 -0.512
ENSG00000197535 E056 13.4704060 0.0021803310 1.198058e-01 4.005634e-01 15 52353871 52354014 144 - 1.213 1.089 -0.443
ENSG00000197535 E057 0.5251888 0.0151008517 2.270263e-02   15 52357499 52359967 2469 - 0.000 0.328 13.788
ENSG00000197535 E058 9.2359142 0.0015085393 9.716750e-02 3.590335e-01 15 52359968 52360069 102 - 1.074 0.920 -0.567
ENSG00000197535 E059 4.2462832 0.0074121440 1.049152e-02 9.566351e-02 15 52360070 52360081 12 - 0.842 0.512 -1.402
ENSG00000197535 E060 4.1142016 0.0041622711 4.421924e-03 5.333840e-02 15 52364554 52364556 3 - 0.842 0.473 -1.594
ENSG00000197535 E061 12.1270564 0.0013411230 8.631730e-02 3.364841e-01 15 52364557 52364702 146 - 1.177 1.036 -0.510
ENSG00000197535 E062 10.6469016 0.0030865866 3.245291e-04 7.523122e-03 15 52367031 52367124 94 - 1.189 0.857 -1.223
ENSG00000197535 E063 0.0000000       15 52369922 52370168 247 -      
ENSG00000197535 E064 18.3821388 0.0008332145 1.410563e-03 2.335657e-02 15 52370169 52370417 249 - 1.376 1.154 -0.781
ENSG00000197535 E065 14.3014125 0.0038763839 9.691884e-02 3.585139e-01 15 52372124 52372363 240 - 1.240 1.108 -0.469
ENSG00000197535 E066 0.2453209 0.0164111853 8.288665e-01   15 52372957 52375303 2347 - 0.084 0.108 0.406
ENSG00000197535 E067 11.5123070 0.0015520081 5.299235e-02 2.567490e-01 15 52375304 52375460 157 - 1.165 1.001 -0.595
ENSG00000197535 E068 13.1658060 0.0011776629 3.381276e-01 6.606736e-01 15 52376347 52376558 212 - 1.183 1.108 -0.268
ENSG00000197535 E069 0.0000000       15 52376559 52376787 229 -      
ENSG00000197535 E070 0.2458369 0.0163642119 8.283962e-01   15 52376788 52376945 158 - 0.084 0.108 0.405
ENSG00000197535 E071 0.2456901 0.0163003052 8.285650e-01   15 52376946 52377627 682 - 0.084 0.108 0.405
ENSG00000197535 E072 0.0000000       15 52379295 52379624 330 -      
ENSG00000197535 E073 6.5243257 0.0021821005 5.357992e-01 8.023763e-01 15 52379625 52379733 109 - 0.904 0.840 -0.247
ENSG00000197535 E074 6.5527762 0.0023289102 3.444996e-02 2.000334e-01 15 52379822 52379908 87 - 0.968 0.741 -0.880
ENSG00000197535 E075 1.6037360 0.0082284486 4.410893e-01 7.413674e-01 15 52379909 52381022 1114 - 0.357 0.473 0.628
ENSG00000197535 E076 0.8330824 0.0195571270 4.368099e-01 7.385575e-01 15 52381023 52381384 362 - 0.315 0.194 -0.917
ENSG00000197535 E077 0.2281253 0.0154088224 3.531369e-01   15 52381385 52381542 158 - 0.154 0.000 -13.212
ENSG00000197535 E078 0.8656697 0.0798520025 4.899239e-01 7.742475e-01 15 52381543 52381704 162 - 0.214 0.328 0.820
ENSG00000197535 E079 2.8145376 0.0112673017 6.555276e-01 8.657366e-01 15 52381705 52382181 477 - 0.551 0.613 0.280
ENSG00000197535 E080 4.2707182 0.0064013188 7.564756e-01 9.134702e-01 15 52382182 52382777 596 - 0.703 0.741 0.157
ENSG00000197535 E081 0.2461098 0.0164110791 8.289784e-01   15 52382778 52383090 313 - 0.084 0.108 0.405
ENSG00000197535 E082 7.9952365 0.0293290162 7.287527e-02 3.066298e-01 15 52383091 52383188 98 - 1.041 0.822 -0.828
ENSG00000197535 E083 9.9091681 0.0110349239 4.997026e-01 7.804078e-01 15 52384161 52384322 162 - 1.066 1.001 -0.239
ENSG00000197535 E084 0.0000000       15 52387750 52387828 79 -      
ENSG00000197535 E085 6.6503802 0.0021188295 1.228775e-02 1.061675e-01 15 52387829 52387912 84 - 0.988 0.718 -1.045
ENSG00000197535 E086 0.1141751 0.0111674859 7.095113e-01   15 52387913 52389237 1325 - 0.084 0.000 -12.290
ENSG00000197535 E087 7.0249340 0.0020081960 2.522543e-02 1.666190e-01 15 52389238 52389363 126 - 0.997 0.763 -0.899
ENSG00000197535 E088 0.0000000       15 52389364 52390081 718 -      
ENSG00000197535 E089 6.9959342 0.0021164376 4.313105e-01 7.340519e-01 15 52391930 52392070 141 - 0.937 0.857 -0.305
ENSG00000197535 E090 1.1135138 0.0120136816 4.579850e-01 7.530944e-01 15 52393401 52396315 2915 - 0.267 0.382 0.727
ENSG00000197535 E091 4.4295826 0.0270700767 2.289285e-01 5.541688e-01 15 52396316 52396397 82 - 0.801 0.642 -0.653
ENSG00000197535 E092 0.0000000       15 52396398 52396613 216 -      
ENSG00000197535 E093 0.1311489 0.0122798568 4.054908e-01   15 52396614 52397027 414 - 0.000 0.108 11.936
ENSG00000197535 E094 0.0000000       15 52397028 52397200 173 -      
ENSG00000197535 E095 14.1458272 0.0009709517 4.114278e-01 7.199673e-01 15 52397201 52397466 266 - 1.207 1.145 -0.221
ENSG00000197535 E096 0.0000000       15 52405108 52405286 179 -      
ENSG00000197535 E097 7.1186559 0.0254161344 2.595323e-02 1.696992e-01 15 52405287 52405393 107 - 1.015 0.741 -1.054
ENSG00000197535 E098 5.7676701 0.0061598625 2.958169e-01 6.237083e-01 15 52407292 52407399 108 - 0.881 0.763 -0.461
ENSG00000197535 E099 5.9681000 0.0079850414 7.997120e-01 9.311819e-01 15 52408059 52408136 78 - 0.829 0.857 0.110
ENSG00000197535 E100 3.6474734 0.0871498575 9.832869e-01 9.986305e-01 15 52408137 52408140 4 - 0.664 0.669 0.019
ENSG00000197535 E101 0.2453240 0.0163408717 8.284505e-01   15 52408141 52410332 2192 - 0.084 0.108 0.405
ENSG00000197535 E102 9.3382882 0.0015432862 7.875772e-01 9.263763e-01 15 52410333 52410476 144 - 1.024 1.001 -0.086
ENSG00000197535 E103 0.6223506 0.2286492044 4.968333e-01   15 52410477 52410730 254 - 0.154 0.266 0.989
ENSG00000197535 E104 0.9636370 0.3609880084 9.153044e-01 9.749754e-01 15 52411176 52411227 52 - 0.315 0.266 -0.332
ENSG00000197535 E105 0.2453240 0.0163408717 8.284505e-01   15 52415116 52415202 87 - 0.084 0.108 0.405
ENSG00000197535 E106 0.2633236 0.2773351123 2.152008e-01   15 52416005 52416144 140 - 0.000 0.194 12.380
ENSG00000197535 E107 7.6840119 0.0018654963 1.593495e-01 4.619752e-01 15 52416145 52416301 157 - 0.997 0.857 -0.527
ENSG00000197535 E108 7.1888296 0.0019555260 1.261941e-01 4.117733e-01 15 52425830 52425974 145 - 0.978 0.822 -0.595
ENSG00000197535 E109 2.3562545 0.0063985316 2.005060e-01 5.189693e-01 15 52428398 52428400 3 - 0.432 0.613 0.865
ENSG00000197535 E110 6.4254113 0.0022436630 8.189856e-01 9.381901e-01 15 52428401 52428569 169 - 0.881 0.857 -0.089
ENSG00000197535 E111 3.5450528 0.0041085381 2.535294e-02 1.671608e-01 15 52433175 52433285 111 - 0.770 0.473 -1.311
ENSG00000197535 E112 0.6050148 0.0145874691 8.890611e-01   15 52524083 52524202 120 - 0.214 0.194 -0.179
ENSG00000197535 E113 0.2287699 0.0153692078 3.533128e-01   15 52526913 52527014 102 - 0.154 0.000 -13.212
ENSG00000197535 E114 2.4996942 0.0059598603 1.750926e-01 4.853007e-01 15 52528780 52529132 353 - 0.622 0.430 -0.916

Help

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