ENSG00000213672

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000294129 ENSG00000213672 No_inf pgwt_inf NCKIPSD protein_coding protein_coding 19.43163 32.33336 11.94871 1.591429 0.5661491 -1.435408 7.172606 9.898526 9.7461671 2.6364267 0.3880062 -0.02235605 0.41720000 0.309800 0.820950 0.51115 0.099444743 0.001363717 FALSE TRUE
ENST00000413374 ENSG00000213672 No_inf pgwt_inf NCKIPSD protein_coding protein_coding 19.43163 32.33336 11.94871 1.591429 0.5661491 -1.435408 4.250238 9.277176 0.0000000 2.2638715 0.0000000 -9.85909613 0.17280000 0.285300 0.000000 -0.28530 0.001363717 0.001363717 FALSE TRUE
ENST00000416649 ENSG00000213672 No_inf pgwt_inf NCKIPSD protein_coding protein_coding 19.43163 32.33336 11.94871 1.591429 0.5661491 -1.435408 4.005261 4.930846 0.0000000 1.2104136 0.0000000 -8.94861419 0.22495833 0.151700 0.000000 -0.15170 0.015280264 0.001363717 FALSE TRUE
MSTRG.20120.3 ENSG00000213672 No_inf pgwt_inf NCKIPSD protein_coding   19.43163 32.33336 11.94871 1.591429 0.5661491 -1.435408 1.244759 2.706857 0.1370024 1.5957387 0.1370024 -4.20802736 0.05730833 0.085375 0.012225 -0.07315 0.992847247 0.001363717 TRUE TRUE
MSTRG.20120.4 ENSG00000213672 No_inf pgwt_inf NCKIPSD protein_coding   19.43163 32.33336 11.94871 1.591429 0.5661491 -1.435408 1.018128 1.717991 0.9638659 0.2651102 0.2179902 -0.82730079 0.05414167 0.053050 0.082100 0.02905 0.992847247 0.001363717 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000213672 E001 0.0000000       3 48673844 48673847 4 -      
ENSG00000213672 E002 57.0804194 0.0002806442 0.336475089 0.65940000 3 48673848 48674365 518 - 1.699 1.737 0.129
ENSG00000213672 E003 43.0846979 0.0003775860 0.085020736 0.33377595 3 48674366 48674634 269 - 1.548 1.629 0.278
ENSG00000213672 E004 23.2631023 0.0007186548 0.894782030 0.96840772 3 48674635 48674747 113 - 1.343 1.350 0.027
ENSG00000213672 E005 1.0503777 0.0110815922 0.027752360 0.17618533 3 48678554 48678563 10 - 0.000 0.375 12.752
ENSG00000213672 E006 28.8753896 0.0005706462 0.443519646 0.74333815 3 48678564 48678736 173 - 1.407 1.451 0.152
ENSG00000213672 E007 19.7812950 0.0007192059 0.069861202 0.29981017 3 48678877 48678969 93 - 1.186 1.316 0.456
ENSG00000213672 E008 3.2480261 0.0043310967 0.003109167 0.04179978 3 48678970 48679054 85 - 0.230 0.694 2.492
ENSG00000213672 E009 11.5367232 0.0013071708 0.176815052 0.48804715 3 48679055 48679075 21 - 0.973 1.096 0.449
ENSG00000213672 E010 19.8188359 0.0006933553 0.724995562 0.89923165 3 48679076 48679183 108 - 1.299 1.274 -0.086
ENSG00000213672 E011 13.4703672 0.0028642818 0.811963853 0.93604387 3 48679377 48679457 81 - 1.111 1.130 0.070
ENSG00000213672 E012 20.8193438 0.0007449466 0.685378275 0.87992433 3 48679575 48679713 139 - 1.321 1.294 -0.097
ENSG00000213672 E013 0.2453240 0.0162513166 0.577652177   3 48679714 48679714 1 - 0.130 0.069 -1.032
ENSG00000213672 E014 14.5078506 0.0198627644 0.532567791 0.80037584 3 48679801 48679887 87 - 1.196 1.136 -0.215
ENSG00000213672 E015 18.3346556 0.0010521541 0.179908091 0.49240054 3 48680059 48680229 171 - 1.314 1.220 -0.331
ENSG00000213672 E016 9.2660785 0.0025104814 0.684288158 0.87957135 3 48680230 48681192 963 - 1.004 0.965 -0.147
ENSG00000213672 E017 2.9155396 0.0055269358 0.483912229 0.77052436 3 48681193 48681286 94 - 0.491 0.592 0.471
ENSG00000213672 E018 17.7838160 0.0007978330 0.551650318 0.81169837 3 48681287 48681529 243 - 1.267 1.224 -0.152
ENSG00000213672 E019 2.4882553 0.0059198233 0.508291070 0.78557086 3 48681530 48681533 4 - 0.580 0.485 -0.447
ENSG00000213672 E020 19.2866311 0.0127275650 0.101360380 0.36696564 3 48681534 48681780 247 - 1.356 1.228 -0.447
ENSG00000213672 E021 13.4772113 0.0026169920 0.270948200 0.59889409 3 48682045 48682135 91 - 1.186 1.096 -0.323
ENSG00000213672 E022 4.4704430 0.0036733520 0.275117392 0.60318349 3 48682136 48682156 21 - 0.796 0.662 -0.547
ENSG00000213672 E023 19.4109971 0.0010099270 0.488385257 0.77349818 3 48682348 48682552 205 - 1.307 1.258 -0.169
ENSG00000213672 E024 0.1316618 0.0122814589 1.000000000   3 48682869 48682902 34 - 0.000 0.069 9.862
ENSG00000213672 E025 10.8043978 0.0013203276 0.096910519 0.35850960 3 48682903 48683012 110 - 1.134 0.988 -0.529
ENSG00000213672 E026 0.3423510 0.0157869153 0.022944450   3 48683013 48683041 29 - 0.312 0.000 -13.882
ENSG00000213672 E027 10.2706009 0.0025122431 0.635154359 0.85456585 3 48685637 48685964 328 - 1.047 1.003 -0.162
ENSG00000213672 E028 0.2620121 0.0161393275 0.607508417   3 48686176 48686364 189 - 0.000 0.128 10.834

Help

Please Click HERE to learn more details about the results from DEXseq.