ENSG00000231607

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000425586 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 0.5977799 0.5655383 0.7436628 0.3678692 0.4443662 0.3890071 0.05508333 0.044275 0.070250 0.025975 1.000000000 0.009376355   FALSE
ENST00000458725 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 3.6823965 3.1327883 4.2015110 0.5350128 0.8286478 0.4222929 0.32655833 0.215825 0.407100 0.191275 0.971653840 0.009376355   FALSE
ENST00000607334 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA miRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 0.7405438 2.2216314 0.0000000 0.3893959 0.0000000 -7.8019549 0.05168333 0.155050 0.000000 -0.155050 0.009376355 0.009376355   FALSE
ENST00000656688 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 1.1542604 1.5613893 0.9916868 0.2102388 0.1405043 -0.6496091 0.10110000 0.107100 0.099550 -0.007550 1.000000000 0.009376355   FALSE
ENST00000668305 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 0.8473947 0.9822637 0.4342623 0.6067651 0.4342623 -1.1593118 0.07398333 0.069075 0.036775 -0.032300 0.992847247 0.009376355   FALSE
ENST00000700934 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 0.5745360 1.0014940 0.0000000 0.7334804 0.0000000 -6.6603439 0.04265833 0.064625 0.000000 -0.064625 0.992847247 0.009376355   FALSE
ENST00000701027 ENSG00000231607 No_inf pgwt_inf DLEU2 lncRNA lncRNA 11.61296 14.43101 10.3566 0.900422 0.6909404 -0.4782281 0.6559329 0.5122152 1.1711468 0.5122152 0.8056146 1.1774720 0.05953333 0.040750 0.111325 0.070575 0.992847247 0.009376355   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000231607 E001 0.0000000       13 49956670 49956732 63 -      
ENSG00000231607 E002 0.4905643 0.062453120 7.759630e-01   13 49956733 49956824 92 - 0.189 0.158 -0.313
ENSG00000231607 E003 0.9980343 0.013832471 7.652536e-01 0.9166742966 13 49956825 49956895 71 - 0.260 0.322 0.424
ENSG00000231607 E004 1.4449306 0.010688669 1.063770e-03 0.0188482562 13 49974773 49975946 1174 - 0.000 0.534 14.624
ENSG00000231607 E005 0.2631768 0.016466029 3.597035e-01   13 49975947 49976332 386 - 0.000 0.158 12.735
ENSG00000231607 E006 1.4449306 0.010688669 1.063770e-03 0.0188482562 13 49976333 49976454 122 - 0.000 0.534 14.624
ENSG00000231607 E007 3.5272953 0.006345921 2.509429e-06 0.0001267512 13 49976455 49978062 1608 - 0.105 0.827 4.387
ENSG00000231607 E008 2.8824173 0.008986207 4.438862e-01 0.7434422303 13 49978063 49979546 1484 - 0.503 0.633 0.594
ENSG00000231607 E009 1.5058877 0.010128280 5.084964e-01 0.7857072745 13 49982552 49983754 1203 - 0.320 0.440 0.687
ENSG00000231607 E010 0.3938127 0.019977718 1.739401e-01   13 49988586 49988621 36 - 0.000 0.220 13.206
ENSG00000231607 E011 0.3769801 0.218313513 8.163227e-01   13 49993711 49993792 82 - 0.105 0.158 0.687
ENSG00000231607 E012 1.3761946 0.010749861 6.714440e-01 0.8731605861 13 49993793 49993961 169 - 0.320 0.404 0.494
ENSG00000231607 E013 0.0000000       13 49997074 49997419 346 -      
ENSG00000231607 E014 9.6772247 0.003041498 9.436244e-01 0.9857770318 13 49997420 49998785 1366 - 1.000 1.037 0.134
ENSG00000231607 E015 0.5070504 0.041235360 4.854993e-01   13 50027088 50027089 2 - 0.105 0.220 1.271
ENSG00000231607 E016 0.9018889 0.012977559 1.082849e-01 0.3798976210 13 50027090 50027132 43 - 0.105 0.365 2.272
ENSG00000231607 E017 2.0312162 0.007769492 1.404668e-01 0.4337883332 13 50027133 50027206 74 - 0.320 0.561 1.272
ENSG00000231607 E018 4.3097088 0.006497030 4.849611e-02 0.2430803820 13 50027207 50027406 200 - 0.539 0.812 1.161
ENSG00000231607 E019 3.6815837 0.004474244 4.195435e-01 0.7258468223 13 50029278 50029492 215 - 0.707 0.633 -0.313
ENSG00000231607 E020 3.4716301 0.004256010 9.875297e-01 0.9998524659 13 50030559 50031685 1127 - 0.631 0.655 0.102
ENSG00000231607 E021 0.1141751 0.011538536 3.981356e-01   13 50043435 50043435 1 - 0.105 0.000 -12.823
ENSG00000231607 E022 0.7020750 0.064723381 4.875457e-02 0.2437774512 13 50043436 50043504 69 - 0.374 0.086 -2.635
ENSG00000231607 E023 0.5878999 0.016101059 9.139570e-02   13 50043505 50043506 2 - 0.320 0.086 -2.313
ENSG00000231607 E024 0.7190488 0.023173730 2.406046e-01 0.5666878525 13 50043507 50043510 4 - 0.320 0.158 -1.313
ENSG00000231607 E025 6.8393243 0.026549225 1.406186e-01 0.4339729940 13 50043511 50043924 414 - 0.963 0.827 -0.520
ENSG00000231607 E026 19.0966854 0.011610683 4.208201e-06 0.0001996395 13 50043925 50044639 715 - 1.435 1.165 -0.944
ENSG00000231607 E027 0.0000000       13 50044640 50044650 11 -      
ENSG00000231607 E028 0.0000000       13 50044651 50044723 73 -      
ENSG00000231607 E029 0.0000000       13 50044724 50044768 45 -      
ENSG00000231607 E030 0.2454580 0.016550623 8.195781e-01   13 50045106 50045117 12 - 0.105 0.086 -0.313
ENSG00000231607 E031 0.2454580 0.016550623 8.195781e-01   13 50045118 50045232 115 - 0.105 0.086 -0.313
ENSG00000231607 E032 0.3940400 0.016935366 1.725055e-01   13 50049119 50049188 70 - 0.000 0.220 13.207
ENSG00000231607 E033 0.3940400 0.016935366 1.725055e-01   13 50049189 50049189 1 - 0.000 0.220 13.207
ENSG00000231607 E034 2.5201828 0.020132799 2.490043e-01 0.5759255460 13 50049190 50049583 394 - 0.421 0.610 0.909
ENSG00000231607 E035 0.0000000       13 50049584 50049662 79 -      
ENSG00000231607 E036 0.1139502 0.011359267 3.983024e-01   13 50068097 50068163 67 - 0.105 0.000 -12.823
ENSG00000231607 E037 0.1316618 0.012458313 7.198934e-01   13 50070582 50070641 60 - 0.000 0.086 11.889
ENSG00000231607 E038 0.0000000       13 50071516 50071629 114 -      
ENSG00000231607 E039 0.0000000       13 50075559 50075653 95 -      
ENSG00000231607 E040 0.0000000       13 50081823 50082062 240 -      
ENSG00000231607 E041 1.7518489 0.008385106 5.935195e-01 0.8342512430 13 50125302 50125720 419 - 0.374 0.474 0.535

Help

Please Click HERE to learn more details about the results from DEXseq.