ENSG00000233384

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000657834 ENSG00000233384 No_inf pgwt_inf   lncRNA lncRNA 13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 0.4952179 0.7223319 0.2282203 0.2281890 0.1402314 -1.6202016 0.05085833 0.082475 0.01515 -0.067325 0.68491865 0.01238601   FALSE
MSTRG.2762.4 ENSG00000233384 No_inf pgwt_inf   lncRNA   13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 1.3388751 0.6235931 1.7003405 0.6235931 0.9127392 1.4326551 0.11262500 0.079100 0.11375 0.034650 0.99284725 0.01238601   FALSE
MSTRG.2762.5 ENSG00000233384 No_inf pgwt_inf   lncRNA   13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 3.4935811 6.1912749 0.7671359 0.7589594 0.5434003 -2.9963261 0.35728333 0.650325 0.04195 -0.608375 0.01238601 0.01238601   FALSE
MSTRG.2762.6 ENSG00000233384 No_inf pgwt_inf   lncRNA   13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 4.8603985 0.0000000 14.5811955 0.0000000 6.3160288 10.5108824 0.19113333 0.000000 0.57340 0.573400 0.17907349 0.01238601   FALSE
MSTRG.2762.7 ENSG00000233384 No_inf pgwt_inf   lncRNA   13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 1.1630812 0.5558035 0.7746513 0.5558035 0.7746513 0.4717504 0.09278333 0.057625 0.03665 -0.020975 1.00000000 0.01238601   FALSE
MSTRG.2762.8 ENSG00000233384 No_inf pgwt_inf   lncRNA   13.64729 9.435984 21.29118 0.7972728 5.084619 1.17316 2.2290153 1.2197939 3.1804844 0.7847418 1.3530400 1.3753590 0.18879167 0.117075 0.21545 0.098375 0.99284725 0.01238601   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000233384 E001 0.0000000       1 224608130 224608385 256 -      
ENSG00000233384 E002 0.0000000       1 224608386 224610887 2502 -      
ENSG00000233384 E003 0.0000000       1 224610888 224611323 436 -      
ENSG00000233384 E004 0.2454678 0.017139509 8.948729e-01   1 224611324 224611411 88 - 0.104 0.087 -0.298
ENSG00000233384 E005 0.3764698 0.017851854 7.007867e-01   1 224611412 224611423 12 - 0.104 0.159 0.702
ENSG00000233384 E006 0.9979779 0.014857593 6.409708e-01 0.857850868 1 224611424 224611429 6 - 0.259 0.323 0.439
ENSG00000233384 E007 2.9611996 0.096065048 9.755540e-01 0.995870650 1 224611430 224611547 118 - 0.600 0.588 -0.057
ENSG00000233384 E008 3.3066409 0.004521756 5.168632e-01 0.790862940 1 224611548 224611592 45 - 0.681 0.588 -0.405
ENSG00000233384 E009 0.7531668 0.017051201 5.394089e-01 0.804785217 1 224615204 224615217 14 - 0.188 0.275 0.702
ENSG00000233384 E010 5.8626354 0.022031703 3.098885e-01 0.636180722 1 224615218 224615360 143 - 0.770 0.869 0.390
ENSG00000233384 E011 3.5848478 0.004421492 9.138320e-01 0.974462916 1 224615361 224615427 67 - 0.656 0.656 0.002
ENSG00000233384 E012 0.3767001 0.017930684 7.001031e-01   1 224615428 224615429 2 - 0.104 0.159 0.702
ENSG00000233384 E013 7.4906300 0.002104940 3.648844e-04 0.008225161 1 224615612 224615736 125 - 0.705 1.030 1.255
ENSG00000233384 E014 1.3422784 0.010631505 5.628052e-01 0.817430286 1 224615737 224615859 123 - 0.420 0.323 -0.561
ENSG00000233384 E015 0.7025853 0.067371725 6.621639e-02 0.291207318 1 224616021 224616035 15 - 0.372 0.087 -2.620
ENSG00000233384 E016 0.4568952 0.017849445 2.910467e-02   1 224616036 224616074 39 - 0.319 0.000 -11.190
ENSG00000233384 E017 3.1689947 0.005179810 8.027694e-05 0.002471780 1 224616075 224616197 123 - 0.843 0.323 -2.435
ENSG00000233384 E018 3.6838756 0.012142285 6.609961e-01 0.867631178 1 224616198 224616305 108 - 0.705 0.635 -0.298

Help

Please Click HERE to learn more details about the results from DEXseq.