ENSG00000241316

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000496640 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA lncRNA 13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 0.17021789 0.0000000 0.37051004 0.00000000 0.07080906 5.249863 0.3647667 0.000000 0.745750 0.745750 0.02382347 0.02382347 FALSE FALSE
ENST00000659899 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA lncRNA 13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 0.09318866 0.1553369 0.00000000 0.09030377 0.00000000 -4.047337 0.0874000 0.089075 0.000000 -0.089075 0.99323661 0.02382347 FALSE FALSE
ENST00000662687 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA lncRNA 13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 0.06931022 0.1436577 0.06427299 0.14365766 0.06427299 -1.048810 0.1010667 0.187725 0.115475 -0.072250 0.99284725 0.02382347   FALSE
ENST00000665078 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA lncRNA 13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 0.08369282 0.1959026 0.00000000 0.11940430 0.00000000 -4.363890 0.0752000 0.148725 0.000000 -0.148725 0.99284725 0.02382347   FALSE
ENST00000671174 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA lncRNA 13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 0.05165528 0.0000000 0.04917570 0.00000000 0.04917570 2.565005 0.1234750 0.000000 0.097400 0.097400 0.94435768 0.02382347   FALSE
MSTRG.20334.11 ENSG00000241316 No_inf pgwt_inf SUCLG2-DT lncRNA   13.93256 40.81381 0.5058725 28.91225 0.03548142 -6.306253 13.33999185 40.0199755 0.00000000 28.94633650 0.00000000 -11.966865 0.1641833 0.492550 0.000000 -0.492550 0.99284725 0.02382347   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000241316 E001 0.0000000       3 67654669 67654676 8 +      
ENSG00000241316 E002 0.1311489 0.01292249 1.000000000   3 67654677 67654711 35 + 0.000 0.081 11.667
ENSG00000241316 E003 0.1311489 0.01292249 1.000000000   3 67654712 67654731 20 + 0.000 0.081 12.959
ENSG00000241316 E004 0.1311489 0.01292249 1.000000000   3 67654732 67654737 6 + 0.000 0.081 12.959
ENSG00000241316 E005 0.1311489 0.01292249 1.000000000   3 67654738 67654741 4 + 0.000 0.081 12.959
ENSG00000241316 E006 0.1311489 0.01292249 1.000000000   3 67654742 67654751 10 + 0.000 0.081 12.959
ENSG00000241316 E007 0.1311489 0.01292249 1.000000000   3 67654752 67654757 6 + 0.000 0.081 12.959
ENSG00000241316 E008 0.1311489 0.01292249 1.000000000   3 67654758 67654759 2 + 0.000 0.081 12.959
ENSG00000241316 E009 0.3934467 0.02294788 0.414940826   3 67654760 67654966 207 + 0.000 0.208 14.090
ENSG00000241316 E010 0.2622978 0.01897986 0.723906061   3 67654967 67655042 76 + 0.000 0.149 13.676
ENSG00000241316 E011 0.2620121 0.01753105 0.718443967   3 67655043 67655046 4 + 0.000 0.149 13.676
ENSG00000241316 E012 0.3928752 0.04040578 0.407981395   3 67655047 67655074 28 + 0.000 0.208 14.087
ENSG00000241316 E013 0.2620121 0.01753105 0.718443967   3 67655075 67655102 28 + 0.000 0.149 13.676
ENSG00000241316 E014 0.0000000       3 67668247 67668277 31 +      
ENSG00000241316 E015 0.9177784 0.15147974 0.073679095 0.30827753 3 67669816 67669909 94 + 0.000 0.386 14.939
ENSG00000241316 E016 0.2630299 0.42887526 0.809283481   3 67670829 67670881 53 + 0.000 0.149 13.639
ENSG00000241316 E017 0.3764698 0.01810421 0.894031846   3 67670882 67670959 78 + 0.112 0.149 0.478
ENSG00000241316 E018 0.4899097 0.02119356 0.391117493   3 67670960 67671004 45 + 0.200 0.149 -0.522
ENSG00000241316 E019 0.0000000       3 67693549 67693682 134 +      
ENSG00000241316 E020 0.5072526 0.02167582 0.962586210   3 67746771 67746957 187 + 0.112 0.208 1.063
ENSG00000241316 E021 2.2955844 0.28451517 0.475692326 0.76517865 3 67746958 67748468 1511 + 0.337 0.587 1.287
ENSG00000241316 E022 0.0000000       3 67749853 67749970 118 +      
ENSG00000241316 E023 0.4907111 0.02077760 0.393068138   3 67750414 67750660 247 + 0.200 0.149 -0.522
ENSG00000241316 E024 3.7632373 0.15424373 0.002090316 0.03141748 3 67750661 67753596 2936 + 0.798 0.563 -0.991
ENSG00000241316 E025 0.0000000       3 67768330 67768433 104 +      
ENSG00000241316 E026 0.0000000       3 67809900 67810115 216 +      
ENSG00000241316 E027 0.1315150 0.01320696 1.000000000   3 67815893 67819215 3323 + 0.000 0.081 12.959
ENSG00000241316 E028 0.0000000       3 67840022 67840839 818 +      
ENSG00000241316 E029 0.0000000       3 67844233 67844352 120 +      
ENSG00000241316 E030 0.0000000       3 67889010 67889109 100 +      
ENSG00000241316 E031 0.0000000       3 67947141 67947713 573 +      

Help

Please Click HERE to learn more details about the results from DEXseq.