ENSG00000287255

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000667072 ENSG00000287255 No_inf pgwt_inf lncRNA lncRNA 82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 2.392990 6.414057 0.7649125 2.984171 0.4750113 -3.051379 0.11195000 0.034575 0.301275 0.266700 9.928472e-01 7.464255e-06   FALSE
ENST00000688930 ENSG00000287255 No_inf pgwt_inf lncRNA lncRNA 82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 4.792522 12.818738 0.5230221 1.699749 0.5230221 -4.589040 0.11254167 0.063775 0.229625 0.165850 9.928472e-01 7.464255e-06   FALSE
ENST00000703001 ENSG00000287255 No_inf pgwt_inf lncRNA lncRNA 82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 5.922794 13.181233 0.7440866 3.542904 0.7440866 -4.128706 0.14973333 0.063000 0.182800 0.119800 9.935907e-01 7.464255e-06   FALSE
MSTRG.16149.3 ENSG00000287255 No_inf pgwt_inf lncRNA   82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 2.729290 5.965106 0.2401969 3.475944 0.2401969 -4.577829 0.07209167 0.030900 0.059000 0.028100 9.928472e-01 7.464255e-06   FALSE
MSTRG.16149.5 ENSG00000287255 No_inf pgwt_inf lncRNA   82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 1.766502 4.751810 0.1529011 1.105897 0.1128794 -4.869442 0.04795000 0.024050 0.083875 0.059825 9.928472e-01 7.464255e-06   FALSE
MSTRG.16149.7 ENSG00000287255 No_inf pgwt_inf lncRNA   82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 59.562295 153.679489 0.0000000 16.386928 0.0000000 -13.907731 0.37320000 0.735125 0.000000 -0.735125 7.464255e-06 7.464255e-06   FALSE
MSTRG.16149.8 ENSG00000287255 No_inf pgwt_inf lncRNA   82.20462 207.437 2.946141 16.33607 0.6061278 -6.132884 1.946953 1.887157 0.4394689 1.887157 0.4394689 -2.077546 0.10351667 0.008975 0.113950 0.104975 9.131593e-01 7.464255e-06   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgwt.inf No.inf log2fold_No.inf_pgwt.inf
ENSG00000287255 E001 0.0000000       2 40511921 40511921 1 +      
ENSG00000287255 E002 1.0502308 0.0117725642 1.000000000 1.00000000 2 40511922 40511983 62 + 0.001 0.155 7.913
ENSG00000287255 E003 7.4485336 0.0018918091 0.740405649 0.90613785 2 40511984 40512087 104 + 0.511 0.596 0.393
ENSG00000287255 E004 14.4853042 0.0010641984 0.942558579 0.98543928 2 40512836 40513755 920 + 0.820 0.824 0.017
ENSG00000287255 E005 10.5836952 0.0017173776 0.758942832 0.91449372 2 40513756 40513834 79 + 0.640 0.714 0.312
ENSG00000287255 E006 7.4472141 0.0021062050 0.741436476 0.90672101 2 40514312 40514324 13 + 0.511 0.596 0.393
ENSG00000287255 E007 12.0414108 0.0021753412 0.247294017 0.57400014 2 40514325 40514390 66 + 0.511 0.764 1.103
ENSG00000287255 E008 0.6385622 0.0168797099 0.127942276   2 40518273 40518306 34 + 0.326 0.084 -2.389
ENSG00000287255 E009 10.6329705 0.0013749207 0.015601558 0.12343134 2 40530171 40530312 142 + 0.001 0.727 11.855
ENSG00000287255 E010 17.1447190 0.0008611503 0.187978107 0.50231580 2 40533189 40533258 70 + 0.640 0.895 1.026
ENSG00000287255 E011 1.0339723 0.0139210667 0.287320449 0.61500012 2 40534806 40534809 4 + 0.326 0.138 -1.581
ENSG00000287255 E012 3.9028549 0.0041014775 0.561399708 0.81684158 2 40534810 40534893 84 + 0.511 0.398 -0.581
ENSG00000287255 E013 16.6876033 0.0008744744 0.542178842 0.80632553 2 40534894 40534935 42 + 0.947 0.873 -0.277
ENSG00000287255 E014 34.8309784 0.0005282772 0.005551334 0.06225531 2 40534936 40535074 139 + 1.390 1.153 -0.833
ENSG00000287255 E015 36.0214379 0.0004846434 0.766474595 0.91728821 2 40540332 40540438 107 + 1.192 1.178 -0.050
ENSG00000287255 E016 56.0744266 0.0002733002 0.298121837 0.62568600 2 40545360 40545793 434 + 1.251 1.364 0.398

Help

Please Click HERE to learn more details about the results from DEXseq.