ENSG00000005801

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000005082 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding protein_coding 15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 5.6451600 5.6576933 6.9204136 0.5946675 0.6168680 0.2901798 0.35406667 0.340300 0.403250 0.062950 0.83537059 0.04010384 FALSE TRUE
ENST00000354599 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding protein_coding 15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 0.6798125 1.4762564 0.0000000 0.8823287 0.0000000 -7.2155392 0.04110833 0.086950 0.000000 -0.086950 0.48241845 0.04010384 FALSE TRUE
ENST00000399602 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding protein_coding 15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 0.8021429 0.2970948 0.8647148 0.2970948 0.4641097 1.5101287 0.05569167 0.020000 0.050950 0.030950 0.66325805 0.04010384 FALSE TRUE
ENST00000649622 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding retained_intron 15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 1.3998271 1.5497070 1.2893695 0.1511294 0.1325045 -0.2634633 0.08914167 0.093375 0.075525 -0.017850 0.87572632 0.04010384 FALSE TRUE
MSTRG.4283.6 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding   15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 3.6835773 2.9565058 6.7124408 1.1487615 0.5552208 1.1802205 0.22415000 0.184275 0.390650 0.206375 0.48189710 0.04010384 FALSE TRUE
MSTRG.4283.9 ENSG00000005801 No_inf pgKDN_inf ZNF195 protein_coding   15.8418 16.49817 17.12757 0.5865886 0.3666324 0.05398243 1.3164190 2.1639600 0.0000000 0.8021396 0.0000000 -7.7641816 0.08520833 0.127800 0.000000 -0.127800 0.04010384 0.04010384 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000005801 E001 0.2448930 0.0165431823 0.9506512808   11 3339261 3339822 562 - 0.099 0.091 -0.124
ENSG00000005801 E002 0.0000000       11 3357927 3357927 1 -      
ENSG00000005801 E003 0.1268540 0.0123375823 0.5822397589   11 3357928 3358049 122 - 0.000 0.091 10.864
ENSG00000005801 E004 0.2454921 0.0164564465 0.9497815872   11 3358050 3358102 53 - 0.099 0.091 -0.124
ENSG00000005801 E005 0.1186381 0.0118972844 0.4969158677   11 3358103 3358136 34 - 0.099 0.000 -11.863
ENSG00000005801 E006 0.7177503 0.0135716945 0.0759201819 0.281541602 11 3358137 3358234 98 - 0.358 0.091 -2.446
ENSG00000005801 E007 33.9180528 0.0004183225 0.4505731193 0.723810407 11 3358235 3358944 710 - 1.563 1.523 -0.135
ENSG00000005801 E008 9.8901948 0.0082110125 0.0746473037 0.278566138 11 3358945 3358993 49 - 0.938 1.105 0.613
ENSG00000005801 E009 15.0366647 0.0009953704 0.1684884434 0.439783947 11 3358994 3359116 123 - 1.147 1.247 0.353
ENSG00000005801 E010 93.1628117 0.0002117796 0.0891170233 0.309812913 11 3359117 3359996 880 - 1.948 1.993 0.150
ENSG00000005801 E011 15.5450782 0.0009556475 0.0883846505 0.308419885 11 3359997 3360038 42 - 1.147 1.269 0.432
ENSG00000005801 E012 28.3269712 0.0007338409 0.9851905562 0.998995064 11 3360039 3360282 244 - 1.468 1.464 -0.012
ENSG00000005801 E013 8.0702639 0.0020165797 0.5675861176 0.805322528 11 3360283 3360315 33 - 0.986 0.930 -0.212
ENSG00000005801 E014 5.3873363 0.0033611231 0.7908371921 0.919869241 11 3360316 3360319 4 - 0.821 0.789 -0.124
ENSG00000005801 E015 6.6258797 0.0023924683 0.8059407695 0.928100981 11 3360320 3360343 24 - 0.869 0.892 0.090
ENSG00000005801 E016 4.7829083 0.0038637659 0.8213851353 0.935176183 11 3360344 3360349 6 - 0.748 0.773 0.098
ENSG00000005801 E017 7.3440690 0.0022403403 0.7567250158 0.904229509 11 3360350 3360384 35 - 0.938 0.905 -0.124
ENSG00000005801 E018 7.7221769 0.0024604905 0.9544646618 0.988879441 11 3360385 3360410 26 - 0.938 0.941 0.013
ENSG00000005801 E019 6.4990902 0.0055693855 0.9086355025 0.971025660 11 3360411 3360415 5 - 0.869 0.879 0.039
ENSG00000005801 E020 9.2790836 0.0016820532 0.3004697417 0.593305083 11 3360416 3360452 37 - 1.060 0.964 -0.353
ENSG00000005801 E021 8.8852722 0.0046020853 0.1114714510 0.350586559 11 3360453 3360477 25 - 1.069 0.917 -0.563
ENSG00000005801 E022 13.2279905 0.0013923513 0.0025620093 0.030665648 11 3360478 3360565 88 - 1.264 1.026 -0.854
ENSG00000005801 E023 3.4425280 0.0427375826 0.6299532582 0.841258302 11 3360720 3360788 69 - 0.609 0.677 0.291
ENSG00000005801 E024 4.2535261 0.0032710708 0.1576294945 0.424252166 11 3361743 3361782 40 - 0.804 0.632 -0.709
ENSG00000005801 E025 2.3021709 0.0101154114 0.1930073324 0.472800902 11 3361783 3361796 14 - 0.609 0.422 -0.902
ENSG00000005801 E026 1.8303861 0.0166229442 0.6895432097 0.872406659 11 3361797 3361808 12 - 0.483 0.422 -0.317
ENSG00000005801 E027 5.3756525 0.0229580883 0.4298727239 0.707938861 11 3361809 3361889 81 - 0.853 0.755 -0.388
ENSG00000005801 E028 1.6043091 0.0090448568 0.4962952444 0.757311861 11 3361890 3361975 86 - 0.358 0.459 0.554
ENSG00000005801 E029 1.3698918 0.0137672005 0.1680851953 0.439091907 11 3361976 3362017 42 - 0.247 0.459 1.291
ENSG00000005801 E030 1.3708034 0.1471225617 0.2663168450 0.559767143 11 3362018 3362032 15 - 0.247 0.459 1.290
ENSG00000005801 E031 2.1160303 0.0081065546 0.1242063246 0.373408245 11 3362033 3362073 41 - 0.358 0.581 1.139
ENSG00000005801 E032 6.2671274 0.0023230135 0.6817127888 0.868278095 11 3362074 3362532 459 - 0.837 0.879 0.159
ENSG00000005801 E033 1.4776187 0.0290390211 0.6778570495 0.866607923 11 3362533 3362545 13 - 0.358 0.422 0.361
ENSG00000005801 E034 2.3680441 0.0060890903 0.0556000159 0.234907071 11 3362546 3362567 22 - 0.358 0.632 1.361
ENSG00000005801 E035 1.8596230 0.0075015528 0.2556053474 0.547577804 11 3362568 3362602 35 - 0.358 0.524 0.876
ENSG00000005801 E036 10.1110515 0.0014719365 0.1596640225 0.427146913 11 3362603 3363317 715 - 0.975 1.096 0.446
ENSG00000005801 E037 3.4702211 0.0051809990 0.0935661076 0.318103533 11 3363318 3363391 74 - 0.519 0.737 0.954
ENSG00000005801 E038 23.6576091 0.0036378479 0.0697994958 0.267217917 11 3363392 3366690 3299 - 1.326 1.439 0.392
ENSG00000005801 E039 1.2154386 0.0197064012 0.4571121602 0.729211976 11 3366691 3366843 153 - 0.404 0.287 -0.709
ENSG00000005801 E040 0.4996088 0.0153685943 0.3590721472   11 3366844 3366945 102 - 0.099 0.231 1.460
ENSG00000005801 E041 0.4999558 0.0153858333 0.3590120236 0.648529995 11 3366946 3367057 112 - 0.099 0.231 1.460
ENSG00000005801 E042 7.3425089 0.0165784377 0.7830353828 0.916583712 11 3367058 3368791 1734 - 0.938 0.905 -0.124
ENSG00000005801 E043 0.6172743 0.1775102359 0.7402520748 0.896943642 11 3368792 3368820 29 - 0.179 0.231 0.459
ENSG00000005801 E044 0.6172743 0.1775102359 0.7402520748 0.896943642 11 3368821 3368855 35 - 0.179 0.231 0.459
ENSG00000005801 E045 0.7526553 0.0148458968 0.1127961932 0.353345524 11 3369241 3369356 116 - 0.099 0.337 2.198
ENSG00000005801 E046 0.7416416 0.0324853964 0.4781345222 0.744226154 11 3369357 3369502 146 - 0.179 0.287 0.876
ENSG00000005801 E047 0.3538994 0.0320855909 0.0905295614   11 3370943 3370974 32 - 0.247 0.000 -13.247
ENSG00000005801 E048 5.5891994 0.2412812710 0.2189895822 0.505726389 11 3370975 3370979 5 - 0.926 0.698 -0.898
ENSG00000005801 E049 10.5197545 0.0092060511 0.0005122785 0.008909781 11 3370980 3371070 91 - 1.206 0.879 -1.200
ENSG00000005801 E050 0.0000000       11 3371071 3371147 77 -      
ENSG00000005801 E051 8.8334787 0.0016109504 0.0022933607 0.028290544 11 3371577 3371703 127 - 1.123 0.836 -1.066
ENSG00000005801 E052 1.9264861 0.0097156104 0.0302077141 0.163478111 11 3373577 3373656 80 - 0.609 0.287 -1.709
ENSG00000005801 E053 0.0000000       11 3373657 3373675 19 -      
ENSG00000005801 E054 0.1187032 0.0118126565 0.4970435487   11 3375497 3375662 166 - 0.099 0.000 -11.864
ENSG00000005801 E055 0.2441377 0.0163706648 0.9498469477   11 3377617 3377802 186 - 0.099 0.091 -0.124
ENSG00000005801 E056 0.6351480 0.0671489989 0.0298612546 0.162583025 11 3377803 3377900 98 - 0.000 0.337 12.857
ENSG00000005801 E057 4.0321944 0.0153845368 0.4803069211 0.745742968 11 3379038 3379222 185 - 0.748 0.655 -0.388

Help

Please Click HERE to learn more details about the results from DEXseq.