ENSG00000007264

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000310132 ENSG00000007264 No_inf pgKDN_inf MATK protein_coding protein_coding 18.35573 10.91186 18.65266 0.3764293 0.6123378 0.7729365 7.672210 0.5727746 9.890089 0.5727746 0.5539248 4.0864316 0.35853333 0.049750 0.53200 0.482250 0.002394316 0.002394316 FALSE TRUE
ENST00000395040 ENSG00000007264 No_inf pgKDN_inf MATK protein_coding protein_coding 18.35573 10.91186 18.65266 0.3764293 0.6123378 0.7729365 3.868053 3.2148992 3.786014 1.6730103 1.6472282 0.2352312 0.22757500 0.291125 0.21220 -0.078925 0.939801064 0.002394316 FALSE TRUE
ENST00000619596 ENSG00000007264 No_inf pgKDN_inf MATK protein_coding protein_coding 18.35573 10.91186 18.65266 0.3764293 0.6123378 0.7729365 2.852654 3.3290511 1.706060 1.1913183 1.7060601 -0.9603381 0.18090000 0.314750 0.08905 -0.225700 0.278214747 0.002394316 FALSE TRUE
MSTRG.14307.6 ENSG00000007264 No_inf pgKDN_inf MATK protein_coding   18.35573 10.91186 18.65266 0.3764293 0.6123378 0.7729365 1.742072 0.9462896 1.941875 0.2947521 1.3353416 1.0293408 0.09120833 0.085500 0.09915 0.013650 0.893491465 0.002394316 FALSE TRUE
MSTRG.14307.7 ENSG00000007264 No_inf pgKDN_inf MATK protein_coding   18.35573 10.91186 18.65266 0.3764293 0.6123378 0.7729365 1.393818 1.7981097 1.215669 0.4715123 0.8264898 -0.5609128 0.09114167 0.165050 0.06175 -0.103300 0.445840835 0.002394316 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000007264 E001 0.0000000       19 3777970 3777972 3 -      
ENSG00000007264 E002 0.0000000       19 3777973 3777974 2 -      
ENSG00000007264 E003 0.7438747 0.0343441881 0.159474448 0.42687193 19 3777975 3777993 19 - 0.140 0.354 1.723
ENSG00000007264 E004 7.2998258 0.0117092006 0.543759012 0.79053921 19 3777994 3778191 198 - 0.885 0.948 0.238
ENSG00000007264 E005 24.6848466 0.0006527710 0.179882471 0.45518350 19 3778192 3778422 231 - 1.430 1.350 -0.277
ENSG00000007264 E006 14.9895447 0.0010114307 0.277104329 0.57050740 19 3778509 3778592 84 - 1.226 1.143 -0.294
ENSG00000007264 E007 7.8787931 0.0018100392 0.902104638 0.96866712 19 3778593 3778595 3 - 0.945 0.932 -0.049
ENSG00000007264 E008 19.0595951 0.0008216465 0.749489836 0.90132129 19 3778992 3779132 141 - 1.285 1.305 0.069
ENSG00000007264 E009 12.7317667 0.0012214000 0.912041474 0.97202289 19 3779133 3779187 55 - 1.133 1.123 -0.036
ENSG00000007264 E010 8.4649973 0.0020878414 0.556861263 0.79900384 19 3779378 3779388 11 - 0.990 0.932 -0.215
ENSG00000007264 E011 14.0525230 0.0035176753 0.612184596 0.83126651 19 3779389 3779451 63 - 1.184 1.143 -0.148
ENSG00000007264 E012 15.2527549 0.0009424673 0.095865746 0.32248632 19 3779533 3779617 85 - 1.151 1.270 0.422
ENSG00000007264 E013 15.2793315 0.0009382532 0.016271928 0.11082387 19 3779698 3779788 91 - 1.127 1.298 0.608
ENSG00000007264 E014 7.5757528 0.0021129925 0.143054877 0.40277311 19 3779789 3779797 9 - 0.863 1.005 0.537
ENSG00000007264 E015 11.4607066 0.0013384015 0.232680978 0.52130459 19 3781607 3781672 66 - 1.045 1.143 0.353
ENSG00000007264 E016 1.7384668 0.0082517755 0.011233706 0.08680211 19 3782562 3782671 110 - 0.246 0.617 2.045
ENSG00000007264 E017 1.5048047 0.0086526238 0.001246345 0.01772221 19 3782818 3782937 120 - 0.140 0.618 3.045
ENSG00000007264 E018 12.0026837 0.0190679752 0.676598331 0.86595978 19 3783126 3783219 94 - 1.120 1.079 -0.148
ENSG00000007264 E019 0.0000000       19 3783220 3783297 78 -      
ENSG00000007264 E020 7.1318984 0.0020375851 0.381190964 0.66763504 19 3783814 3783871 58 - 0.936 0.844 -0.351
ENSG00000007264 E021 11.7423596 0.0150909625 0.504140774 0.76337361 19 3783872 3784020 149 - 1.120 1.056 -0.233
ENSG00000007264 E022 3.2557753 0.0101059242 0.393368994 0.67823801 19 3784021 3784033 13 - 0.665 0.546 -0.525
ENSG00000007264 E023 7.9362121 0.0116382544 0.193158755 0.47297587 19 3784124 3784239 116 - 0.885 1.018 0.501
ENSG00000007264 E024 8.0089865 0.0020916292 0.970224040 0.99397974 19 3784338 3784451 114 - 0.945 0.948 0.009
ENSG00000007264 E025 0.6080807 0.0173888777 0.914634912 0.97309389 19 3784452 3784573 122 - 0.196 0.212 0.138
ENSG00000007264 E026 6.2541536 0.0066496537 0.110155168 0.34829695 19 3784825 3784884 60 - 0.916 0.733 -0.717
ENSG00000007264 E027 4.4581944 0.0037941394 0.314987208 0.60785504 19 3785064 3785096 33 - 0.775 0.649 -0.518
ENSG00000007264 E028 7.0921402 0.0208936309 0.068431030 0.26400280 19 3785097 3785246 150 - 0.972 0.757 -0.830
ENSG00000007264 E029 2.0417029 0.0072395993 0.217158395 0.50340501 19 3785247 3785286 40 - 0.541 0.354 -0.977
ENSG00000007264 E030 0.1265070 0.0123145497 0.316932229   19 3785613 3786024 412 - 0.000 0.119 10.059
ENSG00000007264 E031 0.2441403 0.0162465581 0.694428747   19 3786025 3786168 144 - 0.076 0.119 0.723
ENSG00000007264 E032 4.6866273 0.0862951292 0.124344208 0.37367697 19 3786169 3786413 245 - 0.827 0.583 -1.014
ENSG00000007264 E033 0.0000000       19 3787460 3787715 256 -      
ENSG00000007264 E034 0.0000000       19 3789273 3789404 132 -      
ENSG00000007264 E035 0.0000000       19 3793074 3793129 56 -      
ENSG00000007264 E036 0.0000000       19 3793130 3793398 269 -      
ENSG00000007264 E037 0.0000000       19 3793399 3793401 3 -      
ENSG00000007264 E038 0.1170040 0.0116829132 1.000000000   19 3801532 3801686 155 - 0.076 0.000 -8.718
ENSG00000007264 E039 0.0000000       19 3801687 3801812 126 -      
ENSG00000007264 E040 0.0000000       19 3801895 3802129 235 -      

Help

Please Click HERE to learn more details about the results from DEXseq.