ENSG00000007923

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000377577 ENSG00000007923 No_inf pgKDN_inf DNAJC11 protein_coding protein_coding 23.67213 22.20892 23.74175 0.6596473 0.4096274 0.09624566 16.395074 11.952893 18.944706 0.3514619 1.0221026 0.6639897 0.6889167 0.539975 0.797250 0.257275 0.009366094 0.009366094 FALSE TRUE
ENST00000685485 ENSG00000007923 No_inf pgKDN_inf DNAJC11 protein_coding retained_intron 23.67213 22.20892 23.74175 0.6596473 0.4096274 0.09624566 1.227579 1.791589 0.725821 0.2588500 0.1120594 -1.2918428 0.0525500 0.080825 0.030525 -0.050300 0.422105393 0.009366094 TRUE TRUE
ENST00000691481 ENSG00000007923 No_inf pgKDN_inf DNAJC11 protein_coding retained_intron 23.67213 22.20892 23.74175 0.6596473 0.4096274 0.09624566 2.849788 5.071251 1.055773 0.4588770 0.4074211 -2.2532841 0.1221000 0.227425 0.044450 -0.182975 0.032355885 0.009366094 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000007923 E001 0.0000000       1 6634168 6634169 2 -      
ENSG00000007923 E002 0.0000000       1 6634170 6634182 13 -      
ENSG00000007923 E003 0.0000000       1 6634183 6634183 1 -      
ENSG00000007923 E004 0.0000000       1 6634184 6634185 2 -      
ENSG00000007923 E005 0.0000000       1 6634186 6634210 25 -      
ENSG00000007923 E006 0.0000000       1 6634211 6634784 574 -      
ENSG00000007923 E007 0.0000000       1 6634785 6635112 328 -      
ENSG00000007923 E008 14.0221378 0.0035201370 2.164278e-01 5.025180e-01 1 6635113 6635700 588 - 1.220 1.133 -0.308
ENSG00000007923 E009 26.1504007 0.0005215374 2.340661e-01 5.231110e-01 1 6636117 6636246 130 - 1.462 1.406 -0.193
ENSG00000007923 E010 29.7959445 0.0005705173 9.071348e-02 3.128223e-01 1 6637198 6637340 143 - 1.527 1.449 -0.268
ENSG00000007923 E011 1.0894675 0.0113908635 2.850234e-01 5.787604e-01 1 6637341 6637446 106 - 0.395 0.237 -1.031
ENSG00000007923 E012 20.4659996 0.0007803648 4.238018e-02 2.005700e-01 1 6637447 6637504 58 - 1.389 1.271 -0.411
ENSG00000007923 E013 5.6168447 0.0251863147 2.795933e-03 3.273190e-02 1 6637505 6638082 578 - 0.571 0.965 1.597
ENSG00000007923 E014 1.6212123 0.0794802175 8.296110e-02 2.968386e-01 1 6638083 6638294 212 - 0.241 0.534 1.706
ENSG00000007923 E015 19.5776281 0.0007576543 6.461828e-01 8.502474e-01 1 6638295 6638364 70 - 1.323 1.304 -0.067
ENSG00000007923 E016 2.4033200 0.0056933375 3.054034e-05 8.770834e-04 1 6638365 6639530 1166 - 0.096 0.729 4.139
ENSG00000007923 E017 25.8926877 0.0005861382 1.928999e-02 1.241363e-01 1 6639902 6640057 156 - 1.348 1.492 0.497
ENSG00000007923 E018 19.9708406 0.0225064446 1.802709e-01 4.557175e-01 1 6644558 6644669 112 - 1.251 1.376 0.435
ENSG00000007923 E019 7.1006143 0.0119199478 6.787386e-01 8.670805e-01 1 6644670 6644674 5 - 0.926 0.891 -0.131
ENSG00000007923 E020 0.0000000       1 6644969 6645040 72 -      
ENSG00000007923 E021 15.9252665 0.0013915724 7.882439e-01 9.187860e-01 1 6645041 6645126 86 - 1.233 1.224 -0.031
ENSG00000007923 E022 0.3808443 0.0285143851 1.141419e-01   1 6645127 6645788 662 - 0.000 0.237 13.538
ENSG00000007923 E023 8.1971146 0.0019927375 7.553486e-01 9.035894e-01 1 6645789 6645799 11 - 0.974 0.954 -0.074
ENSG00000007923 E024 11.9879131 0.0013568885 6.642282e-01 8.603589e-01 1 6645800 6645870 71 - 1.126 1.101 -0.090
ENSG00000007923 E025 4.4000804 0.0031776207 6.379479e-01 8.455906e-01 1 6645871 6645875 5 - 0.756 0.709 -0.192
ENSG00000007923 E026 14.2014326 0.0010041980 7.997257e-01 9.248737e-01 1 6645876 6645978 103 - 1.186 1.177 -0.031
ENSG00000007923 E027 21.1208247 0.0012081435 3.718541e-13 5.142456e-11 1 6645979 6647076 1098 - 1.007 1.518 1.804
ENSG00000007923 E028 6.2403168 0.0022062353 3.305144e-04 6.290037e-03 1 6647340 6647780 441 - 0.599 1.009 1.632
ENSG00000007923 E029 3.3570273 0.0049639500 4.507508e-02 2.076249e-01 1 6650570 6651016 447 - 0.474 0.748 1.217
ENSG00000007923 E030 3.3826179 0.0347978354 2.996715e-03 3.449286e-02 1 6651017 6651180 164 - 0.350 0.801 2.106
ENSG00000007923 E031 3.6095702 0.0040552975 2.081201e-02 1.300214e-01 1 6651181 6651528 348 - 0.474 0.784 1.361
ENSG00000007923 E032 11.9427175 0.0015703455 1.487392e-01 4.107577e-01 1 6651529 6651602 74 - 1.165 1.057 -0.386
ENSG00000007923 E033 0.6357773 0.0445225908 2.564639e-02 1.478739e-01 1 6652650 6652663 14 - 0.000 0.345 14.275
ENSG00000007923 E034 1.6246102 0.0082855602 5.849199e-02 2.422412e-01 1 6652664 6652828 165 - 0.241 0.534 1.706
ENSG00000007923 E035 10.7430859 0.0013550171 1.706493e-04 3.672704e-03 1 6652829 6652913 85 - 1.207 0.891 -1.155
ENSG00000007923 E036 9.5351402 0.0132838983 1.640495e-03 2.192351e-02 1 6652914 6652951 38 - 1.157 0.848 -1.142
ENSG00000007923 E037 1.0080587 0.0118836003 3.091102e-02 1.655566e-01 1 6652952 6653387 436 - 0.096 0.431 2.776
ENSG00000007923 E038 1.1164426 0.0117828351 3.529131e-01 6.428253e-01 1 6653388 6653808 421 - 0.241 0.390 0.969
ENSG00000007923 E039 0.3706473 0.0163317092 6.132141e-01   1 6653809 6653910 102 - 0.096 0.172 0.969
ENSG00000007923 E040 18.4458243 0.0088612784 4.424995e-03 4.551061e-02 1 6653911 6654039 129 - 1.385 1.177 -0.728
ENSG00000007923 E041 0.2356421 0.0160282132 2.265249e-01   1 6654108 6654287 180 - 0.175 0.000 -13.122
ENSG00000007923 E042 1.6522728 0.0737304163 2.479199e-04 4.993021e-03 1 6666597 6667708 1112 - 0.000 0.618 15.654
ENSG00000007923 E043 13.4164996 0.0011119496 1.632303e-01 4.319121e-01 1 6667709 6667810 102 - 1.207 1.109 -0.347
ENSG00000007923 E044 0.0000000       1 6668125 6668210 86 -      
ENSG00000007923 E045 0.3815350 0.0216855492 1.131018e-01   1 6670461 6670910 450 - 0.000 0.237 13.538
ENSG00000007923 E046 11.9655848 0.0011283886 2.970039e-01 5.902648e-01 1 6678394 6678467 74 - 1.150 1.075 -0.267
ENSG00000007923 E047 17.9966055 0.0008709655 8.881112e-03 7.426262e-02 1 6680908 6681037 130 - 1.357 1.191 -0.584
ENSG00000007923 E048 0.1265070 0.0122632403 5.639384e-01   1 6691221 6691831 611 - 0.000 0.094 11.953
ENSG00000007923 E049 9.2772539 0.0015490932 3.725009e-01 6.604144e-01 1 6701729 6701924 196 - 1.047 0.977 -0.260

Help

Please Click HERE to learn more details about the results from DEXseq.