ENSG00000009335

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000348165 ENSG00000009335 No_inf pgKDN_inf UBE3C protein_coding protein_coding 35.11151 27.26536 41.10665 1.428375 0.62448 0.5921246 20.397084 12.695810 26.403296 0.5751983 1.1968578 1.0557760 0.57140833 0.472575 0.644000 0.171425 0.27821190 0.01215049 FALSE TRUE
ENST00000474153 ENSG00000009335 No_inf pgKDN_inf UBE3C protein_coding retained_intron 35.11151 27.26536 41.10665 1.428375 0.62448 0.5921246 1.899534 2.660163 1.458360 0.8979835 0.7195858 -0.8627227 0.05931667 0.099950 0.035150 -0.064800 0.77836077 0.01215049 FALSE TRUE
ENST00000494532 ENSG00000009335 No_inf pgKDN_inf UBE3C protein_coding retained_intron 35.11151 27.26536 41.10665 1.428375 0.62448 0.5921246 1.165000 3.495000 0.000000 1.3838833 0.0000000 -8.4532707 0.04073333 0.122200 0.000000 -0.122200 0.01215049 0.01215049 FALSE FALSE
MSTRG.27150.10 ENSG00000009335 No_inf pgKDN_inf UBE3C protein_coding   35.11151 27.26536 41.10665 1.428375 0.62448 0.5921246 9.475186 6.907135 9.942629 1.2279143 2.3634571 0.5249030 0.26727500 0.248950 0.239675 -0.009275 0.97519441 0.01215049 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000009335 E001 0.0000000       7 157138916 157138925 10 +      
ENSG00000009335 E002 0.9500226 0.0788358914 0.150120542 0.41262651 7 157138926 157138966 41 + 0.362 0.121 -2.012
ENSG00000009335 E003 6.1053881 0.0022621136 0.007380304 0.06545787 7 157138967 157139170 204 + 0.936 0.626 -1.241
ENSG00000009335 E004 2.5206413 0.0702516632 0.275925502 0.56934053 7 157139171 157139194 24 + 0.599 0.417 -0.883
ENSG00000009335 E005 2.3937223 0.0368521402 0.127527955 0.37869243 7 157139195 157139211 17 + 0.599 0.360 -1.205
ENSG00000009335 E006 3.8688490 0.0171491814 0.769408437 0.91087825 7 157139212 157139278 67 + 0.690 0.658 -0.138
ENSG00000009335 E007 4.0760391 0.0306040561 0.124494801 0.37396283 7 157139279 157139338 60 + 0.766 0.554 -0.906
ENSG00000009335 E008 5.7472669 0.1425287138 0.072939773 0.27439895 7 157163810 157163863 54 + 0.906 0.625 -1.132
ENSG00000009335 E009 0.0000000       7 157164419 157164530 112 +      
ENSG00000009335 E010 10.2489097 0.0216181105 0.205335262 0.48859755 7 157169048 157169122 75 + 1.085 0.957 -0.469
ENSG00000009335 E011 17.9047822 0.0008283582 0.414430978 0.69462620 7 157170304 157170450 147 + 1.284 1.233 -0.176
ENSG00000009335 E012 12.9793166 0.0207472494 0.778015345 0.91486644 7 157174919 157175034 116 + 1.123 1.153 0.108
ENSG00000009335 E013 18.8654091 0.0045253107 0.382268844 0.66852117 7 157178690 157178847 158 + 1.258 1.329 0.248
ENSG00000009335 E014 17.8006368 0.0008098881 0.681833808 0.86828429 7 157181518 157181671 154 + 1.271 1.249 -0.075
ENSG00000009335 E015 34.0318914 0.0004169464 0.454288946 0.72700789 7 157182108 157182328 221 + 1.544 1.513 -0.107
ENSG00000009335 E016 29.4118497 0.0011160802 0.516010373 0.77182597 7 157183878 157184029 152 + 1.482 1.453 -0.100
ENSG00000009335 E017 32.3282963 0.0004851248 0.316824462 0.60970533 7 157186834 157187021 188 + 1.528 1.482 -0.157
ENSG00000009335 E018 0.1265070 0.0123076900 0.307320550   7 157188949 157189296 348 + 0.000 0.121 11.554
ENSG00000009335 E019 19.8878018 0.0011730217 0.958292050 0.99002932 7 157201721 157201807 87 + 1.304 1.315 0.039
ENSG00000009335 E020 25.1946879 0.0049688794 0.042065791 0.19957569 7 157207398 157207512 115 + 1.452 1.322 -0.451
ENSG00000009335 E021 15.4420665 0.0028442952 0.089913199 0.31146369 7 157207513 157207555 43 + 1.249 1.122 -0.450
ENSG00000009335 E022 34.1040728 0.0003984225 0.154496158 0.41994737 7 157207703 157207935 233 + 1.558 1.491 -0.229
ENSG00000009335 E023 15.5176347 0.0018798181 0.948872114 0.98676200 7 157216867 157216971 105 + 1.206 1.208 0.009
ENSG00000009335 E024 0.6060071 0.0187427654 0.891624164 0.96397502 7 157216972 157217245 274 + 0.192 0.216 0.210
ENSG00000009335 E025 0.0000000       7 157220668 157220688 21 +      
ENSG00000009335 E026 14.6187197 0.0009260670 0.197943980 0.47932073 7 157220689 157220776 88 + 1.216 1.122 -0.333
ENSG00000009335 E027 3.0398476 0.0045383847 0.760595875 0.90634636 7 157220777 157223253 2477 + 0.578 0.626 0.209
ENSG00000009335 E028 18.0147115 0.0091674594 0.349140240 0.63959930 7 157223254 157223351 98 + 1.292 1.225 -0.235
ENSG00000009335 E029 21.7926348 0.0086632325 0.632105854 0.84231845 7 157225407 157225499 93 + 1.357 1.329 -0.098
ENSG00000009335 E030 11.2622971 0.0166378353 0.787823020 0.91866361 7 157225500 157225501 2 + 1.085 1.066 -0.068
ENSG00000009335 E031 17.7070654 0.0018437532 0.869292594 0.95507082 7 157225502 157225539 38 + 1.253 1.273 0.068
ENSG00000009335 E032 44.0684903 0.0003359387 0.048225045 0.21617101 7 157231080 157231327 248 + 1.602 1.699 0.328
ENSG00000009335 E033 2.8920332 0.0335831337 0.462856279 0.73299734 7 157231328 157231815 488 + 0.619 0.513 -0.485
ENSG00000009335 E034 0.5875265 0.3342862169 0.186072011 0.46399534 7 157243235 157243294 60 + 0.285 0.000 -12.643
ENSG00000009335 E035 35.9553513 0.0005372884 0.367882085 0.65648680 7 157248368 157248580 213 + 1.535 1.588 0.181
ENSG00000009335 E036 0.2537079 0.2327986496 0.144490469   7 157248581 157248624 44 + 0.000 0.216 11.675
ENSG00000009335 E037 37.2104181 0.0004687985 0.299405656 0.59230989 7 157253954 157254142 189 + 1.547 1.606 0.202
ENSG00000009335 E038 16.9723843 0.0012682069 0.751716529 0.90219525 7 157254244 157254310 67 + 1.249 1.233 -0.054
ENSG00000009335 E039 1.2339169 0.0101997302 0.145759355 0.40646218 7 157256687 157256913 227 + 0.241 0.467 1.379
ENSG00000009335 E040 25.3676254 0.0006459080 0.814131585 0.93208034 7 157256914 157257044 131 + 1.401 1.423 0.076
ENSG00000009335 E041 279.5819757 0.0031220510 0.007979753 0.06903753 7 157267585 157269371 1787 + 2.409 2.475 0.221

Help

Please Click HERE to learn more details about the results from DEXseq.