ENSG00000010803

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000326197 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding protein_coding 42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 1.982557 5.9476712 0.000000 2.0905173 0.0000000 -9.2186047 0.03710000 0.111300 0.000000 -0.111300 0.03321648 0.01599756 FALSE TRUE
ENST00000472037 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding protein_coding 42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 3.431514 9.0282932 0.000000 3.3288815 0.0000000 -9.8199065 0.06139167 0.154375 0.000000 -0.154375 0.01599756 0.01599756 FALSE TRUE
ENST00000695335 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding protein_coding 42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 1.300103 1.2554457 2.644865 1.2554457 1.5419780 1.0689927 0.03355833 0.021250 0.079425 0.058175 0.41121510 0.01599756 FALSE TRUE
MSTRG.805.1 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding   42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 5.035737 3.1998006 8.305404 2.0299530 1.3251740 1.3733026 0.13050833 0.055100 0.243275 0.188175 0.16959689 0.01599756 FALSE TRUE
MSTRG.805.11 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding   42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 1.763762 0.4672977 2.162613 0.4672977 1.2498230 2.1864700 0.04761667 0.008125 0.065900 0.057775 0.70929725 0.01599756 FALSE TRUE
MSTRG.805.14 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding   42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 11.741766 12.6800265 11.326896 3.0198904 1.3594752 -0.1626694 0.28472500 0.224250 0.337225 0.112975 0.58429743 0.01599756 FALSE TRUE
MSTRG.805.22 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding   42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 3.509820 5.6575129 2.315116 0.6866989 0.3568047 -1.2854130 0.07947500 0.102050 0.069125 -0.032925 0.77008312 0.01599756 TRUE TRUE
MSTRG.805.3 ENSG00000010803 No_inf pgKDN_inf SCMH1 protein_coding   42.32377 54.80465 33.83369 3.786882 0.9157638 -0.6956747 3.816726 4.4458621 1.196346 1.8762381 0.8443880 -1.8850606 0.09234167 0.089150 0.037075 -0.052075 0.78975492 0.01599756 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000010803 E001 0.1170040 0.0117390263 3.335464e-01   1 41027146 41027161 16 - 0.116 0.000 -11.109
ENSG00000010803 E002 0.1170040 0.0117390263 3.335464e-01   1 41027162 41027201 40 - 0.116 0.000 -13.417
ENSG00000010803 E003 0.3711203 0.0166462411 9.207476e-01   1 41027202 41027203 2 - 0.116 0.143 0.340
ENSG00000010803 E004 0.8700036 0.0131690596 5.766453e-01 0.810549549 1 41027204 41027210 7 - 0.208 0.295 0.662
ENSG00000010803 E005 0.9965106 0.0115820799 4.154105e-01 0.695540434 1 41027211 41027212 2 - 0.208 0.336 0.925
ENSG00000010803 E006 2.7194337 0.0062444465 8.218623e-01 0.935407240 1 41027213 41027221 9 - 0.539 0.571 0.147
ENSG00000010803 E007 44.6828045 0.0049344440 8.509789e-03 0.072028711 1 41027222 41027475 254 - 1.550 1.693 0.487
ENSG00000010803 E008 178.3723670 0.0001273852 1.520834e-02 0.106167065 1 41027476 41028156 681 - 2.206 2.257 0.171
ENSG00000010803 E009 21.2085978 0.0006421217 7.364935e-02 0.276220965 1 41028157 41028191 35 - 1.253 1.373 0.417
ENSG00000010803 E010 23.8724514 0.0006309584 5.399200e-03 0.052345937 1 41028192 41028319 128 - 1.261 1.439 0.620
ENSG00000010803 E011 0.0000000       1 41028584 41028641 58 -      
ENSG00000010803 E012 0.0000000       1 41028642 41028711 70 -      
ENSG00000010803 E013 3.3273838 0.0893257061 7.741091e-01 0.913184599 1 41028712 41028726 15 - 0.642 0.614 -0.121
ENSG00000010803 E014 9.7790773 0.0015782883 5.503989e-01 0.794845761 1 41033983 41034048 66 - 0.983 1.039 0.205
ENSG00000010803 E015 1.2536163 0.0864108476 2.433315e-01 0.533316042 1 41034049 41034102 54 - 0.208 0.408 1.340
ENSG00000010803 E016 44.1856796 0.0004528336 7.946786e-01 0.921800663 1 41037362 41037541 180 - 1.647 1.636 -0.038
ENSG00000010803 E017 14.7537028 0.0011086825 4.794199e-05 0.001286419 1 41040840 41041310 471 - 0.939 1.281 1.235
ENSG00000010803 E018 7.1948841 0.0300209202 3.074099e-01 0.600616630 1 41041311 41041421 111 - 0.815 0.944 0.492
ENSG00000010803 E019 9.3075417 0.0017110882 1.488046e-01 0.410875328 1 41041422 41041565 144 - 0.907 1.046 0.517
ENSG00000010803 E020 0.9890827 0.1743437213 9.776620e-01 0.996676081 1 41045713 41045836 124 - 0.284 0.295 0.076
ENSG00000010803 E021 9.6345984 0.0014479090 9.618043e-01 0.991684772 1 41046407 41046417 11 - 1.010 1.015 0.018
ENSG00000010803 E022 38.2768972 0.0004197446 6.856897e-04 0.011169432 1 41046418 41046598 181 - 1.674 1.512 -0.549
ENSG00000010803 E023 0.0000000       1 41046599 41046669 71 -      
ENSG00000010803 E024 42.4866977 0.0003201397 3.792357e-03 0.040931959 1 41048690 41048890 201 - 1.701 1.571 -0.443
ENSG00000010803 E025 31.7401628 0.0012678769 9.492110e-01 0.986762002 1 41070595 41070721 127 - 1.498 1.502 0.014
ENSG00000010803 E026 48.2629783 0.0022614506 1.621451e-01 0.430603856 1 41075219 41075451 233 - 1.717 1.653 -0.215
ENSG00000010803 E027 39.7536071 0.0014225793 9.624565e-02 0.323088228 1 41113283 41113526 244 - 1.644 1.564 -0.274
ENSG00000010803 E028 18.4729231 0.0125738253 4.123471e-01 0.693635344 1 41116922 41117010 89 - 1.316 1.249 -0.234
ENSG00000010803 E029 35.3647202 0.0004420803 2.810323e-01 0.574266812 1 41142878 41143112 235 - 1.579 1.525 -0.183
ENSG00000010803 E030 0.1271363 0.0123830160 8.817082e-01   1 41146062 41146099 38 - 0.000 0.077 11.768
ENSG00000010803 E031 13.8619067 0.0191160919 5.947070e-01 0.821762223 1 41151614 41151684 71 - 1.124 1.177 0.188
ENSG00000010803 E032 13.0304994 0.0021702474 2.469750e-01 0.537566051 1 41152599 41152741 143 - 1.189 1.096 -0.332
ENSG00000010803 E033 15.9256942 0.0011328634 9.956791e-01 1.000000000 1 41159725 41159933 209 - 1.214 1.214 0.000
ENSG00000010803 E034 10.2005044 0.0329424302 2.903925e-01 0.584033630 1 41160875 41160898 24 - 1.104 0.990 -0.416
ENSG00000010803 E035 14.4889760 0.0011945250 8.342152e-02 0.297640234 1 41161364 41161432 69 - 1.253 1.123 -0.464
ENSG00000010803 E036 1.3753436 0.0221176351 1.506283e-01 0.413245286 1 41161433 41161490 58 - 0.208 0.440 1.510
ENSG00000010803 E037 1.2430752 0.0102575932 5.691125e-01 0.806201657 1 41162779 41163017 239 - 0.284 0.373 0.562
ENSG00000010803 E038 0.2530140 0.2563751266 5.101710e-01   1 41185984 41186120 137 - 0.000 0.143 12.092
ENSG00000010803 E039 14.9218364 0.0042409018 9.804040e-03 0.079277744 1 41186121 41186250 130 - 1.303 1.103 -0.707
ENSG00000010803 E040 0.2533610 0.0159684665 4.446740e-01   1 41194323 41194354 32 - 0.000 0.143 12.718
ENSG00000010803 E041 8.5937179 0.0137607837 2.770838e-01 0.570507398 1 41242059 41242306 248 - 1.035 0.924 -0.412

Help

Please Click HERE to learn more details about the results from DEXseq.