ENSG00000010810

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000229471 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding protein_coding 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 17.725594 17.182866 20.298101 4.0006436 1.5196725 0.2402453 0.18033333 0.148925 0.224150 0.075225 0.51499026 0.01903844 FALSE TRUE
ENST00000368667 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding protein_coding 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 7.896266 9.843732 5.463709 2.5246853 1.0325119 -0.8481514 0.07886667 0.084150 0.059275 -0.024875 0.84429840 0.01903844 FALSE TRUE
ENST00000368678 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding protein_coding 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 20.928775 15.902313 24.413850 1.3088436 1.6287491 0.6181471 0.21892500 0.137250 0.272750 0.135500 0.04928287 0.01903844 FALSE TRUE
ENST00000368682 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding protein_coding 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 6.416726 8.712786 6.119046 0.3213244 0.9942573 -0.5091265 0.06402500 0.074700 0.069025 -0.005675 0.92244375 0.01903844 FALSE TRUE
ENST00000467921 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding retained_intron 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 10.164294 19.623109 5.771103 1.7871104 1.0069259 -1.7638720 0.09610000 0.168675 0.063400 -0.105275 0.01903844 0.01903844 FALSE FALSE
ENST00000491885 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding protein_coding_CDS_not_defined 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 8.327470 14.409932 2.652599 6.3261459 2.6525988 -2.4371574 0.07680833 0.120200 0.024850 -0.095350 0.42103141 0.01903844 FALSE TRUE
ENST00000495935 ENSG00000010810 No_inf pgKDN_inf FYN protein_coding retained_intron 99.92781 116.6192 91.29582 3.107986 6.461218 -0.3531499 9.315868 11.351883 10.038075 1.0541696 1.1663571 -0.1772828 0.09426667 0.097700 0.112600 0.014900 0.89636860 0.01903844 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000010810 E001 0.6250433 0.0149400705 2.395958e-01 5.286873e-01 6 111660332 111660443 112 - 0.103 0.279 1.756
ENSG00000010810 E002 30.5796861 0.0004702185 8.855260e-02 3.086382e-01 6 111660444 111661281 838 - 1.441 1.535 0.322
ENSG00000010810 E003 4.1778192 0.0080910796 8.554264e-01 9.491558e-01 6 111661282 111661285 4 - 0.699 0.722 0.097
ENSG00000010810 E004 82.6389352 0.0025801713 6.692131e-02 2.607523e-01 6 111661286 111661556 271 - 1.878 1.949 0.238
ENSG00000010810 E005 117.9842169 0.0005973979 4.885115e-01 7.517727e-01 6 111661557 111661759 203 - 2.061 2.082 0.070
ENSG00000010810 E006 111.0925937 0.0001682150 1.782144e-01 4.529816e-01 6 111661760 111661947 188 - 2.024 2.063 0.132
ENSG00000010810 E007 0.3724725 0.0167038876 6.962206e-01   6 111674465 111674498 34 - 0.103 0.161 0.756
ENSG00000010810 E008 86.1948560 0.0040249037 6.626100e-01 8.593678e-01 6 111674499 111674630 132 - 1.946 1.930 -0.055
ENSG00000010810 E009 0.1271363 0.0124665124 6.379546e-01   6 111676419 111676544 126 - 0.000 0.088 10.459
ENSG00000010810 E010 100.3335388 0.0001655419 5.220684e-01 7.757564e-01 6 111694375 111694528 154 - 1.991 2.011 0.069
ENSG00000010810 E011 56.2367409 0.0053365364 3.105755e-01 6.036462e-01 6 111694628 111694700 73 - 1.726 1.776 0.170
ENSG00000010810 E012 24.0861599 0.0192332577 7.368904e-01 8.956860e-01 6 111694701 111694704 4 - 1.383 1.407 0.082
ENSG00000010810 E013 25.5891434 0.0188877525 4.912269e-01 7.535510e-01 6 111696277 111696281 5 - 1.393 1.444 0.176
ENSG00000010810 E014 34.4857974 0.0033725385 1.868692e-01 4.648610e-01 6 111696282 111696299 18 - 1.504 1.578 0.256
ENSG00000010810 E015 86.1007393 0.0001873057 2.773422e-01 5.706831e-01 6 111696300 111696456 157 - 1.955 1.922 -0.112
ENSG00000010810 E016 17.1646309 0.0166669427 6.666847e-08 4.040109e-06 6 111696457 111696815 359 - 0.899 1.414 1.850
ENSG00000010810 E017 11.0377400 0.0015256126 1.927492e-08 1.299467e-06 6 111699147 111699514 368 - 0.699 1.241 2.039
ENSG00000010810 E018 53.1724998 0.0003787467 8.401507e-01 9.425882e-01 6 111699515 111699670 156 - 1.735 1.728 -0.023
ENSG00000010810 E019 8.0469453 0.0017436450 9.536880e-02 3.215165e-01 6 111699935 111700103 169 - 0.853 1.019 0.625
ENSG00000010810 E020 15.2256474 0.0010940802 1.002897e-02 8.046246e-02 6 111700104 111700186 83 - 1.086 1.284 0.704
ENSG00000010810 E021 13.1233480 0.0258939170 5.440077e-02 2.322813e-01 6 111700187 111700268 82 - 1.025 1.224 0.716
ENSG00000010810 E022 8.8877842 0.0021802589 6.167549e-06 2.252137e-04 6 111702416 111702877 462 - 0.675 1.141 1.782
ENSG00000010810 E023 1.2616754 0.1151782571 3.137445e-02 1.671259e-01 6 111702878 111702884 7 - 0.103 0.481 2.926
ENSG00000010810 E024 53.3907471 0.0002798891 8.761507e-02 3.067152e-01 6 111702885 111703022 138 - 1.769 1.701 -0.231
ENSG00000010810 E025 20.1467335 0.0135431606 1.202549e-01 3.667209e-01 6 111703023 111703034 12 - 1.388 1.263 -0.436
ENSG00000010810 E026 28.5761442 0.0029812044 5.821858e-01 8.138831e-01 6 111703999 111704019 21 - 1.485 1.454 -0.107
ENSG00000010810 E027 38.5461595 0.0040986726 7.870471e-01 9.182046e-01 6 111704020 111704086 67 - 1.601 1.589 -0.041
ENSG00000010810 E028 18.8234609 0.0124922793 7.312977e-01 8.932539e-01 6 111704087 111704087 1 - 1.275 1.308 0.116
ENSG00000010810 E029 20.2716181 0.0157167697 9.816010e-01 9.982180e-01 6 111704088 111704102 15 - 1.322 1.327 0.019
ENSG00000010810 E030 20.3332697 0.0045926289 3.689326e-01 6.573726e-01 6 111707922 111707929 8 - 1.359 1.299 -0.209
ENSG00000010810 E031 24.2678926 0.0006141740 4.349711e-01 7.119309e-01 6 111707930 111707945 16 - 1.424 1.379 -0.156
ENSG00000010810 E032 35.7955040 0.0005115520 3.187684e-01 6.113960e-01 6 111707946 111708010 65 - 1.589 1.541 -0.165
ENSG00000010810 E033 18.3737392 0.0032390722 3.170861e-01 6.098257e-01 6 111708011 111708016 6 - 1.322 1.252 -0.244
ENSG00000010810 E034 17.8920340 0.0010324287 3.875665e-01 6.733455e-01 6 111708017 111708020 4 - 1.305 1.247 -0.204
ENSG00000010810 E035 0.6253929 0.0153594125 2.390801e-01 5.280211e-01 6 111708021 111708227 207 - 0.103 0.279 1.756
ENSG00000010810 E036 0.4998298 0.0416086885 4.149890e-01   6 111708947 111709064 118 - 0.103 0.224 1.341
ENSG00000010810 E037 23.8853080 0.0013714606 2.128810e-01 4.980491e-01 6 111714347 111714370 24 - 1.433 1.358 -0.259
ENSG00000010810 E038 21.8912873 0.0009881100 9.778347e-02 3.259489e-01 6 111714371 111714381 11 - 1.411 1.308 -0.357
ENSG00000010810 E039 30.3821297 0.0004904289 2.205701e-01 5.075202e-01 6 111714382 111714429 48 - 1.528 1.464 -0.221
ENSG00000010810 E040 19.5021571 0.0061022833 7.363063e-01 8.953403e-01 6 111714430 111714443 14 - 1.322 1.299 -0.080
ENSG00000010810 E041 0.2438580 0.0164468198 8.939379e-01   6 111714444 111714492 49 - 0.103 0.088 -0.244
ENSG00000010810 E042 0.9869429 0.0161780928 6.424450e-01 8.483199e-01 6 111719657 111719804 148 - 0.255 0.327 0.493
ENSG00000010810 E043 27.3457371 0.0031661039 5.221378e-01 7.757761e-01 6 111719805 111719855 51 - 1.470 1.433 -0.127
ENSG00000010810 E044 14.5264015 0.0038129640 6.306249e-02 2.526301e-01 6 111719856 111719857 2 - 1.263 1.119 -0.511
ENSG00000010810 E045 66.6476391 0.0038312039 1.413206e-01 3.998313e-01 6 111719858 111720062 205 - 1.861 1.798 -0.212
ENSG00000010810 E046 2.1220152 0.0656979022 9.343351e-02 3.177930e-01 6 111740981 111741093 113 - 0.315 0.594 1.457
ENSG00000010810 E047 0.0000000       6 111741094 111741097 4 -      
ENSG00000010810 E048 1.3678831 0.0095069646 2.142299e-01 4.994500e-01 6 111754434 111754677 244 - 0.255 0.447 1.171
ENSG00000010810 E049 0.1187032 0.0119408102 4.524537e-01   6 111758834 111759039 206 - 0.103 0.000 -11.622
ENSG00000010810 E050 0.0000000       6 111759040 111759131 92 -      
ENSG00000010810 E051 0.0000000       6 111759845 111759925 81 -      
ENSG00000010810 E052 23.6470369 0.0006824710 2.642654e-01 5.572773e-01 6 111780566 111780635 70 - 1.424 1.358 -0.229
ENSG00000010810 E053 0.0000000       6 111781056 111781080 25 -      
ENSG00000010810 E054 0.0000000       6 111793623 111793912 290 -      
ENSG00000010810 E055 0.1265070 0.0122884408 6.381246e-01   6 111798355 111798423 69 - 0.000 0.088 10.461
ENSG00000010810 E056 4.6598946 0.0037835686 8.412299e-01 9.430543e-01 6 111813892 111814107 216 - 0.763 0.740 -0.092
ENSG00000010810 E057 0.8591800 0.2183981242 8.173057e-01 9.336088e-01 6 111814108 111814290 183 - 0.255 0.279 0.173
ENSG00000010810 E058 0.8363858 0.0283782487 3.142097e-02 1.672581e-01 6 111818615 111818740 126 - 0.415 0.088 -2.829
ENSG00000010810 E059 0.1186381 0.0118999666 4.524773e-01   6 111819860 111820078 219 - 0.103 0.000 -11.623
ENSG00000010810 E060 0.0000000       6 111844777 111844944 168 -      
ENSG00000010810 E061 10.5011507 0.0128479937 1.405916e-01 3.989071e-01 6 111846589 111846629 41 - 1.131 0.990 -0.513
ENSG00000010810 E062 0.0000000       6 111858289 111858383 95 -      
ENSG00000010810 E063 25.3189879 0.0006845284 2.061402e-04 4.294308e-03 6 111872968 111873205 238 - 1.525 1.308 -0.748
ENSG00000010810 E064 10.7915960 0.0363985306 1.177139e-02 8.945723e-02 6 111873206 111873269 64 - 1.209 0.914 -1.077
ENSG00000010810 E065 16.1432188 0.0045032640 5.460732e-04 9.355754e-03 6 111873270 111873477 208 - 1.359 1.096 -0.929

Help

Please Click HERE to learn more details about the results from DEXseq.