ENSG00000029363

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000527536 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding protein_coding 77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 25.139997 9.316670 34.152271 1.3445777 2.2105390 1.8729699 0.30785833 0.168675 0.379625 0.210950 2.946908e-03 1.218348e-05 FALSE TRUE
ENST00000527613 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding nonsense_mediated_decay 77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 6.567196 8.456439 6.341139 0.9460084 2.0504943 -0.4147400 0.09550833 0.155375 0.072700 -0.082675 3.865670e-01 1.218348e-05 TRUE TRUE
ENST00000534762 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding protein_coding 77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 22.866281 7.551616 33.104713 2.9124173 3.0282009 2.1307059 0.27329167 0.132125 0.366525 0.234400 2.657703e-01 1.218348e-05 FALSE TRUE
ENST00000534792 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding retained_intron 77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 1.662328 3.292681 0.000000 0.8511593 0.0000000 -8.3674938 0.02612500 0.059975 0.000000 -0.059975 1.218348e-05 1.218348e-05 FALSE FALSE
MSTRG.25361.4 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding   77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 4.097763 7.132967 2.691463 0.5487684 0.8558366 -1.4027827 0.06332500 0.130800 0.030075 -0.100725 2.130803e-02 1.218348e-05 TRUE TRUE
MSTRG.25361.7 ENSG00000029363 No_inf pgKDN_inf BCLAF1 protein_coding   77.04644 55.13126 89.85438 2.365857 2.627436 0.7046172 7.945338 12.285929 7.769986 0.6702904 1.3649210 -0.6603413 0.11790833 0.224950 0.087525 -0.137425 2.668639e-02 1.218348e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000029363 E001 0.0000000       6 136256627 136256862 236 -      
ENSG00000029363 E002 0.0000000       6 136256863 136256882 20 -      
ENSG00000029363 E003 1.7680803 0.0119790058 1.543361e-04 3.373363e-03 6 136256883 136256997 115 - 0.086 0.657 4.007
ENSG00000029363 E004 31.0032582 0.0004600766 1.064600e-12 1.380244e-10 6 136256998 136258293 1296 - 1.280 1.670 1.341
ENSG00000029363 E005 11.0681676 0.0326781254 9.773533e-02 3.258690e-01 6 136258294 136258525 232 - 0.982 1.173 0.693
ENSG00000029363 E006 6.9060835 0.0032254186 1.899879e-02 1.227604e-01 6 136258526 136258585 60 - 0.767 1.011 0.934
ENSG00000029363 E007 4.5597501 0.0032475483 7.709708e-02 2.840550e-01 6 136258586 136258592 7 - 0.634 0.844 0.859
ENSG00000029363 E008 239.2449245 0.0001051754 4.129906e-03 4.344061e-02 6 136258593 136259350 758 - 2.354 2.407 0.178
ENSG00000029363 E009 110.9018989 0.0002156101 2.050461e-03 2.603333e-02 6 136259351 136259690 340 - 2.005 2.093 0.294
ENSG00000029363 E010 22.1327195 0.0006809910 3.013155e-01 5.943658e-01 6 136259691 136259695 5 - 1.332 1.397 0.227
ENSG00000029363 E011 241.3082373 0.0001212612 4.962055e-01 7.572273e-01 6 136259696 136260745 1050 - 2.377 2.390 0.044
ENSG00000029363 E012 37.6754604 0.0003738378 5.440743e-02 2.322813e-01 6 136260746 136260894 149 - 1.627 1.534 -0.317
ENSG00000029363 E013 17.7048715 0.0007808055 3.959238e-02 1.929475e-01 6 136260895 136260901 7 - 1.332 1.188 -0.505
ENSG00000029363 E014 23.0287506 0.0006541452 1.263869e-02 9.353119e-02 6 136260902 136260927 26 - 1.445 1.290 -0.537
ENSG00000029363 E015 31.2045952 0.0007193494 3.324079e-02 1.733318e-01 6 136260928 136261003 76 - 1.556 1.442 -0.392
ENSG00000029363 E016 19.2401165 0.0007478398 5.529962e-01 7.963031e-01 6 136261004 136261029 26 - 1.323 1.284 -0.135
ENSG00000029363 E017 44.7913937 0.0067972971 4.203758e-01 6.997484e-01 6 136261030 136261109 80 - 1.680 1.635 -0.152
ENSG00000029363 E018 30.8928805 0.0022624378 2.983152e-01 5.913000e-01 6 136261110 136261115 6 - 1.529 1.471 -0.198
ENSG00000029363 E019 35.4177149 0.0004283913 3.922867e-01 6.773246e-01 6 136261265 136261300 36 - 1.580 1.538 -0.143
ENSG00000029363 E020 61.5954353 0.0002330322 1.904839e-01 4.696483e-01 6 136261301 136261477 177 - 1.818 1.769 -0.165
ENSG00000029363 E021 54.0970354 0.0005484999 3.560876e-01 6.458795e-01 6 136267029 136267175 147 - 1.757 1.720 -0.126
ENSG00000029363 E022 25.0716385 0.0043678444 2.936130e-01 5.871798e-01 6 136268162 136268273 112 - 1.445 1.378 -0.232
ENSG00000029363 E023 24.0324253 0.0006778527 9.799985e-01 9.977097e-01 6 136268274 136268339 66 - 1.398 1.397 -0.002
ENSG00000029363 E024 3.0633301 0.0313317636 5.159983e-01 7.718260e-01 6 136268340 136268671 332 - 0.561 0.657 0.422
ENSG00000029363 E025 1.1169729 0.1835622508 2.851999e-01 5.788796e-01 6 136269089 136269140 52 - 0.220 0.421 1.307
ENSG00000029363 E026 7.9847843 0.0057368420 9.809433e-02 3.266621e-01 6 136269141 136269230 90 - 0.868 1.033 0.618
ENSG00000029363 E027 5.1643199 0.0029341435 1.125771e-01 3.529873e-01 6 136269231 136269261 31 - 0.696 0.877 0.721
ENSG00000029363 E028 3.5866952 0.0044966987 2.684913e-02 1.521093e-01 6 136269262 136269263 2 - 0.505 0.790 1.232
ENSG00000029363 E029 5.2184790 0.0061535695 6.918496e-04 1.124261e-02 6 136269264 136269303 40 - 0.561 0.962 1.628
ENSG00000029363 E030 1.6498809 0.0088488898 1.318076e-05 4.326787e-04 6 136269304 136269436 133 - 0.000 0.657 14.179
ENSG00000029363 E031 26.7209842 0.0006255903 8.956316e-01 9.656171e-01 6 136269437 136269475 39 - 1.438 1.446 0.029
ENSG00000029363 E032 53.7226203 0.0047911189 3.686938e-01 6.571390e-01 6 136269476 136269612 137 - 1.757 1.713 -0.149
ENSG00000029363 E033 1.8455207 0.0094305794 5.132753e-01 7.701660e-01 6 136269613 136269959 347 - 0.405 0.502 0.499
ENSG00000029363 E034 0.7537247 0.1676563300 8.851895e-02 3.086250e-01 6 136270323 136270383 61 - 0.086 0.373 2.628
ENSG00000029363 E035 0.6011896 0.0532960518 2.668702e-01 5.601987e-01 6 136271919 136271994 76 - 0.274 0.105 -1.694
ENSG00000029363 E036 27.5190372 0.0065078910 4.696042e-01 7.376407e-01 6 136271995 136272076 82 - 1.475 1.429 -0.157
ENSG00000029363 E037 9.6473132 0.0104124059 7.407738e-01 8.971486e-01 6 136272077 136272079 3 - 1.010 1.044 0.123
ENSG00000029363 E038 29.0480198 0.0007746245 1.563122e-01 4.225577e-01 6 136273082 136273187 106 - 1.512 1.433 -0.269
ENSG00000029363 E039 1.7142947 0.1301395408 7.921158e-01 9.205667e-01 6 136273188 136273550 363 - 0.405 0.463 0.307
ENSG00000029363 E040 7.3566254 0.0123067034 1.714720e-05 5.408288e-04 6 136273963 136274189 227 - 0.634 1.113 1.859
ENSG00000029363 E041 10.9847849 0.0092184338 1.229469e-02 9.187587e-02 6 136275532 136275554 23 - 1.172 0.936 -0.864
ENSG00000029363 E042 21.8517491 0.0215628242 2.499231e-01 5.408833e-01 6 136275555 136275701 147 - 1.401 1.302 -0.345
ENSG00000029363 E043 22.0036004 0.0123549085 3.336781e-01 6.256594e-01 6 136275843 136275989 147 - 1.394 1.320 -0.258
ENSG00000029363 E044 20.8914905 0.0006608569 9.193275e-02 3.148771e-01 6 136275990 136276467 478 - 1.386 1.278 -0.377
ENSG00000029363 E045 0.2451451 0.0164385629 8.705901e-01   6 136276468 136276508 41 - 0.086 0.105 0.306
ENSG00000029363 E046 0.7317890 0.0428122883 8.032801e-01 9.269172e-01 6 136276509 136276621 113 - 0.220 0.259 0.307
ENSG00000029363 E047 58.6548070 0.0002457662 5.022439e-05 1.334385e-03 6 136277865 136278770 906 - 1.842 1.682 -0.540
ENSG00000029363 E048 7.6196931 0.0026098681 6.892256e-02 2.652540e-01 6 136278771 136278776 6 - 1.010 0.827 -0.694
ENSG00000029363 E049 0.1265070 0.0122790263 4.351674e-01   6 136279483 136279762 280 - 0.000 0.105 10.630
ENSG00000029363 E050 16.4009544 0.0008048543 2.656907e-04 5.268295e-03 6 136279763 136279876 114 - 1.345 1.075 -0.957
ENSG00000029363 E051 18.0656397 0.0007739809 5.381435e-02 2.307604e-01 6 136282584 136282687 104 - 1.336 1.203 -0.467
ENSG00000029363 E052 13.1854066 0.0010294772 7.512709e-01 9.019465e-01 6 136289713 136289851 139 - 1.139 1.165 0.092

Help

Please Click HERE to learn more details about the results from DEXseq.